Hb_001958_030

Information

Type -
Description -
Location Contig1958: 10478-12947
Sequence    

Annotation

kegg
ID rcu:RCOM_1371760
description hypothetical protein
nr
ID XP_012081130.1
description PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID A0A067K1X7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16983 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein nuclear fusion defective 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19597: 3935-11243 , PASA_asmbl_19598: 11624-12514
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001958_030 0.0 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
2 Hb_000188_070 0.0521309654 - - calcineurin-like phosphoesterase [Manihot esculenta]
3 Hb_000692_060 0.062189567 - - calcium-dependent protein kinase, putative [Ricinus communis]
4 Hb_002710_040 0.0725958513 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
5 Hb_033834_020 0.075664357 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001638_190 0.0935155788 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
7 Hb_003387_010 0.0950569147 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
8 Hb_002918_170 0.0985433229 - - PREDICTED: MACPF domain-containing protein NSL1 [Jatropha curcas]
9 Hb_022167_010 0.1007358509 - - Kinase, putative isoform 2 [Theobroma cacao]
10 Hb_007254_010 0.1007792455 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
11 Hb_000163_140 0.1033381769 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
12 Hb_108576_020 0.1038231501 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001153_160 0.1064755233 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
14 Hb_004213_010 0.1083588032 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_001544_060 0.1121462098 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
16 Hb_163950_090 0.1127380447 - - PREDICTED: traB domain-containing protein isoform X1 [Jatropha curcas]
17 Hb_003043_130 0.1130821913 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
18 Hb_000928_100 0.1131130198 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
19 Hb_000236_130 0.1141372924 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
20 Hb_000445_310 0.1147369157 - - hypothetical protein B456_011G218000 [Gossypium raimondii]

Gene co-expression network

sample Hb_001958_030 Hb_001958_030 Hb_000188_070 Hb_000188_070 Hb_001958_030--Hb_000188_070 Hb_000692_060 Hb_000692_060 Hb_001958_030--Hb_000692_060 Hb_002710_040 Hb_002710_040 Hb_001958_030--Hb_002710_040 Hb_033834_020 Hb_033834_020 Hb_001958_030--Hb_033834_020 Hb_001638_190 Hb_001638_190 Hb_001958_030--Hb_001638_190 Hb_003387_010 Hb_003387_010 Hb_001958_030--Hb_003387_010 Hb_000188_070--Hb_033834_020 Hb_000188_070--Hb_000692_060 Hb_007254_010 Hb_007254_010 Hb_000188_070--Hb_007254_010 Hb_000188_070--Hb_001638_190 Hb_000928_100 Hb_000928_100 Hb_000188_070--Hb_000928_100 Hb_000692_060--Hb_007254_010 Hb_000692_060--Hb_033834_020 Hb_000236_130 Hb_000236_130 Hb_000692_060--Hb_000236_130 Hb_022167_010 Hb_022167_010 Hb_000692_060--Hb_022167_010 Hb_002710_040--Hb_003387_010 Hb_002710_040--Hb_000188_070 Hb_163950_090 Hb_163950_090 Hb_002710_040--Hb_163950_090 Hb_004218_060 Hb_004218_060 Hb_002710_040--Hb_004218_060 Hb_001942_060 Hb_001942_060 Hb_002710_040--Hb_001942_060 Hb_033834_020--Hb_007254_010 Hb_033834_020--Hb_022167_010 Hb_033834_020--Hb_000928_100 Hb_000345_400 Hb_000345_400 Hb_001638_190--Hb_000345_400 Hb_001638_190--Hb_000692_060 Hb_001655_080 Hb_001655_080 Hb_001638_190--Hb_001655_080 Hb_000358_160 Hb_000358_160 Hb_001638_190--Hb_000358_160 Hb_002918_170 Hb_002918_170 Hb_003387_010--Hb_002918_170 Hb_089736_010 Hb_089736_010 Hb_003387_010--Hb_089736_010 Hb_004223_120 Hb_004223_120 Hb_003387_010--Hb_004223_120 Hb_000084_210 Hb_000084_210 Hb_003387_010--Hb_000084_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0835634 1.0521 0.190378 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0747384 0.451182

CAGE analysis