Hb_000345_400

Information

Type -
Description -
Location Contig345: 348659-354482
Sequence    

Annotation

kegg
ID rcu:RCOM_1431490
description hypothetical protein
nr
ID XP_002512379.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RF60
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1431490 PE=4 SV=1
Gene Ontology
ID GO:0009507
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36035: 348688-354411
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_400 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001638_190 0.0714902139 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
3 Hb_000294_020 0.0816514379 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
4 Hb_001442_050 0.0830329679 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
5 Hb_000358_160 0.0914743598 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
6 Hb_092516_010 0.0923517659 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
7 Hb_110266_010 0.0948108619 - - PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]
8 Hb_000638_220 0.1036921487 - - PREDICTED: photosystem I reaction center subunit N, chloroplastic [Jatropha curcas]
9 Hb_003777_090 0.105469906 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
10 Hb_000175_200 0.1055833353 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000483_470 0.1070559323 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
12 Hb_001655_080 0.1076361873 - - Purple acid phosphatase precursor, putative [Ricinus communis]
13 Hb_000123_360 0.1108089297 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000313_250 0.1132233508 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
15 Hb_002027_100 0.1136275119 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000890_170 0.1140653112 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
17 Hb_061126_010 0.117678423 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
18 Hb_000928_100 0.1185027378 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
19 Hb_000692_060 0.1199682878 - - calcium-dependent protein kinase, putative [Ricinus communis]
20 Hb_000120_490 0.1208597897 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000345_400 Hb_000345_400 Hb_001638_190 Hb_001638_190 Hb_000345_400--Hb_001638_190 Hb_000294_020 Hb_000294_020 Hb_000345_400--Hb_000294_020 Hb_001442_050 Hb_001442_050 Hb_000345_400--Hb_001442_050 Hb_000358_160 Hb_000358_160 Hb_000345_400--Hb_000358_160 Hb_092516_010 Hb_092516_010 Hb_000345_400--Hb_092516_010 Hb_110266_010 Hb_110266_010 Hb_000345_400--Hb_110266_010 Hb_000188_070 Hb_000188_070 Hb_001638_190--Hb_000188_070 Hb_000692_060 Hb_000692_060 Hb_001638_190--Hb_000692_060 Hb_001958_030 Hb_001958_030 Hb_001638_190--Hb_001958_030 Hb_001655_080 Hb_001655_080 Hb_001638_190--Hb_001655_080 Hb_001638_190--Hb_000358_160 Hb_003777_090 Hb_003777_090 Hb_000294_020--Hb_003777_090 Hb_000483_470 Hb_000483_470 Hb_000294_020--Hb_000483_470 Hb_000236_130 Hb_000236_130 Hb_000294_020--Hb_000236_130 Hb_000294_020--Hb_092516_010 Hb_000928_100 Hb_000928_100 Hb_000294_020--Hb_000928_100 Hb_022167_010 Hb_022167_010 Hb_000294_020--Hb_022167_010 Hb_002027_100 Hb_002027_100 Hb_001442_050--Hb_002027_100 Hb_001442_050--Hb_000358_160 Hb_000123_360 Hb_000123_360 Hb_001442_050--Hb_000123_360 Hb_001442_050--Hb_110266_010 Hb_001442_050--Hb_001638_190 Hb_000358_160--Hb_092516_010 Hb_000358_160--Hb_001655_080 Hb_027684_010 Hb_027684_010 Hb_000358_160--Hb_027684_010 Hb_021443_060 Hb_021443_060 Hb_000358_160--Hb_021443_060 Hb_000313_250 Hb_000313_250 Hb_000358_160--Hb_000313_250 Hb_092516_010--Hb_021443_060 Hb_092516_010--Hb_110266_010 Hb_092516_010--Hb_000313_250 Hb_092516_010--Hb_001655_080 Hb_002007_120 Hb_002007_120 Hb_110266_010--Hb_002007_120 Hb_110266_010--Hb_000313_250 Hb_048141_050 Hb_048141_050 Hb_110266_010--Hb_048141_050 Hb_110266_010--Hb_000294_020 Hb_078954_030 Hb_078954_030 Hb_110266_010--Hb_078954_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.224892 9.4235 64.3514 14.5886 0.148303 0.367129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.06772 0.777685 0.405516 4.35974 43.1201

CAGE analysis