Hb_000123_360

Information

Type -
Description -
Location Contig123: 315728-318255
Sequence    

Annotation

kegg
ID pop:POPTR_0010s21710g
description POPTRDRAFT_822505; photosystem 2 reaction center PsbP family protein
nr
ID XP_012072930.1
description PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID O80634
description Photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Arabidopsis thaliana GN=PNSL1 PE=1 SV=2
trembl
ID A0A067KQW7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08399 PE=4 SV=1
Gene Ontology
ID GO:0009523
description psbp-like protein chloroplastic isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06991: 315737-318123 , PASA_asmbl_06992: 315718-318175
cDNA
(Sanger)
(ID:Location)		 002_M24.ab1: 316055-318175

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_360 0.0 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000358_160 0.0937574086 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
3 Hb_110266_010 0.094864423 - - PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]
4 Hb_001442_050 0.0973736863 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
5 Hb_002007_120 0.105469734 - - PREDICTED: psbP domain-containing protein 7, chloroplastic [Jatropha curcas]
6 Hb_000345_400 0.1108089297 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000638_220 0.1114330822 - - PREDICTED: photosystem I reaction center subunit N, chloroplastic [Jatropha curcas]
8 Hb_002843_130 0.1182505761 - - PREDICTED: GRF1-interacting factor 2-like isoform X2 [Jatropha curcas]
9 Hb_001135_070 0.1200465586 - - glutathione-s-transferase omega, putative [Ricinus communis]
10 Hb_003517_110 0.1237607801 - - PREDICTED: uncharacterized protein LOC105633058 [Jatropha curcas]
11 Hb_092516_010 0.1264826484 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
12 Hb_004102_060 0.1265883804 - - JHL25H03.11 [Jatropha curcas]
13 Hb_000974_040 0.1270751398 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Jatropha curcas]
14 Hb_000302_230 0.1278504103 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000313_250 0.1299220644 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
16 Hb_005000_110 0.1333408893 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
17 Hb_001623_380 0.1352778959 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
18 Hb_003680_060 0.1364021037 - - hypothetical protein VITISV_022322 [Vitis vinifera]
19 Hb_000393_040 0.1366472812 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
20 Hb_004855_070 0.1369787911 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]

Gene co-expression network

sample Hb_000123_360 Hb_000123_360 Hb_000358_160 Hb_000358_160 Hb_000123_360--Hb_000358_160 Hb_110266_010 Hb_110266_010 Hb_000123_360--Hb_110266_010 Hb_001442_050 Hb_001442_050 Hb_000123_360--Hb_001442_050 Hb_002007_120 Hb_002007_120 Hb_000123_360--Hb_002007_120 Hb_000345_400 Hb_000345_400 Hb_000123_360--Hb_000345_400 Hb_000638_220 Hb_000638_220 Hb_000123_360--Hb_000638_220 Hb_092516_010 Hb_092516_010 Hb_000358_160--Hb_092516_010 Hb_001655_080 Hb_001655_080 Hb_000358_160--Hb_001655_080 Hb_027684_010 Hb_027684_010 Hb_000358_160--Hb_027684_010 Hb_021443_060 Hb_021443_060 Hb_000358_160--Hb_021443_060 Hb_000313_250 Hb_000313_250 Hb_000358_160--Hb_000313_250 Hb_000358_160--Hb_000345_400 Hb_110266_010--Hb_002007_120 Hb_110266_010--Hb_092516_010 Hb_110266_010--Hb_000313_250 Hb_048141_050 Hb_048141_050 Hb_110266_010--Hb_048141_050 Hb_000294_020 Hb_000294_020 Hb_110266_010--Hb_000294_020 Hb_078954_030 Hb_078954_030 Hb_110266_010--Hb_078954_030 Hb_002027_100 Hb_002027_100 Hb_001442_050--Hb_002027_100 Hb_001442_050--Hb_000345_400 Hb_001442_050--Hb_000358_160 Hb_001442_050--Hb_110266_010 Hb_001638_190 Hb_001638_190 Hb_001442_050--Hb_001638_190 Hb_002007_120--Hb_000313_250 Hb_002007_120--Hb_048141_050 Hb_002007_120--Hb_092516_010 Hb_000530_040 Hb_000530_040 Hb_002007_120--Hb_000530_040 Hb_000962_090 Hb_000962_090 Hb_002007_120--Hb_000962_090 Hb_000345_400--Hb_001638_190 Hb_000345_400--Hb_000294_020 Hb_000345_400--Hb_092516_010 Hb_000345_400--Hb_110266_010 Hb_000638_220--Hb_110266_010 Hb_000638_220--Hb_000345_400 Hb_000638_220--Hb_000962_090 Hb_000638_220--Hb_092516_010 Hb_007462_020 Hb_007462_020 Hb_000638_220--Hb_007462_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.474044 2.80117 35.1592 7.81536 0.138831 0.49448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.41855 0.828921 0 0.932299 21.3127

CAGE analysis