Hb_000638_220

Information

Type -
Description -
Location Contig638: 162199-163027
Sequence    

Annotation

kegg
ID rcu:RCOM_1463130
description Photosystem I reaction center subunit N, chloroplast precursor, putative
nr
ID XP_012066567.1
description PREDICTED: photosystem I reaction center subunit N, chloroplastic [Jatropha curcas]
swissprot
ID P49107
description Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2
trembl
ID A0A067L5Q4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24342 PE=4 SV=1
Gene Ontology
ID GO:0009522
description photosystem i reaction center subunit chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52032: 162074-163146
cDNA
(Sanger)
(ID:Location)		 001_B05.ab1: 162215-163082 , 003_H11.ab1: 162213-163088 , 023_E09.ab1: 162258-163082 , 034_L24.ab1: 162215-163082 , 047_O20.ab1: 162213-163082 , 048_C05.ab1: 162225-163073

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_220 0.0 - - PREDICTED: photosystem I reaction center subunit N, chloroplastic [Jatropha curcas]
2 Hb_110266_010 0.0911313716 - - PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]
3 Hb_000345_400 0.1036921487 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000962_090 0.1062410235 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
5 Hb_092516_010 0.1072754651 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
6 Hb_007462_020 0.1087007273 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
7 Hb_000123_360 0.1114330822 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_005000_110 0.1133129679 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
9 Hb_005211_080 0.1137340911 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
10 Hb_000313_250 0.1150562316 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
11 Hb_000294_020 0.1167892295 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
12 Hb_000358_160 0.1183888949 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
13 Hb_004994_280 0.1187251717 - - hypothetical protein JCGZ_14421 [Jatropha curcas]
14 Hb_002007_120 0.1198576629 - - PREDICTED: psbP domain-containing protein 7, chloroplastic [Jatropha curcas]
15 Hb_007597_030 0.1204976691 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_004102_060 0.1218800279 - - JHL25H03.11 [Jatropha curcas]
17 Hb_001014_240 0.1222916765 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
18 Hb_000120_490 0.1223277388 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
19 Hb_000359_050 0.1225272057 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
20 Hb_003937_010 0.122892776 - - hypothetical protein JCGZ_20930 [Jatropha curcas]

Gene co-expression network

sample Hb_000638_220 Hb_000638_220 Hb_110266_010 Hb_110266_010 Hb_000638_220--Hb_110266_010 Hb_000345_400 Hb_000345_400 Hb_000638_220--Hb_000345_400 Hb_000962_090 Hb_000962_090 Hb_000638_220--Hb_000962_090 Hb_092516_010 Hb_092516_010 Hb_000638_220--Hb_092516_010 Hb_007462_020 Hb_007462_020 Hb_000638_220--Hb_007462_020 Hb_000123_360 Hb_000123_360 Hb_000638_220--Hb_000123_360 Hb_002007_120 Hb_002007_120 Hb_110266_010--Hb_002007_120 Hb_110266_010--Hb_092516_010 Hb_000313_250 Hb_000313_250 Hb_110266_010--Hb_000313_250 Hb_048141_050 Hb_048141_050 Hb_110266_010--Hb_048141_050 Hb_000294_020 Hb_000294_020 Hb_110266_010--Hb_000294_020 Hb_078954_030 Hb_078954_030 Hb_110266_010--Hb_078954_030 Hb_001638_190 Hb_001638_190 Hb_000345_400--Hb_001638_190 Hb_000345_400--Hb_000294_020 Hb_001442_050 Hb_001442_050 Hb_000345_400--Hb_001442_050 Hb_000358_160 Hb_000358_160 Hb_000345_400--Hb_000358_160 Hb_000345_400--Hb_092516_010 Hb_000345_400--Hb_110266_010 Hb_005211_080 Hb_005211_080 Hb_000962_090--Hb_005211_080 Hb_000359_050 Hb_000359_050 Hb_000962_090--Hb_000359_050 Hb_001343_030 Hb_001343_030 Hb_000962_090--Hb_001343_030 Hb_001014_240 Hb_001014_240 Hb_000962_090--Hb_001014_240 Hb_005329_010 Hb_005329_010 Hb_000962_090--Hb_005329_010 Hb_001006_150 Hb_001006_150 Hb_000962_090--Hb_001006_150 Hb_092516_010--Hb_000358_160 Hb_092516_010--Hb_000294_020 Hb_021443_060 Hb_021443_060 Hb_092516_010--Hb_021443_060 Hb_092516_010--Hb_000313_250 Hb_001655_080 Hb_001655_080 Hb_092516_010--Hb_001655_080 Hb_004017_030 Hb_004017_030 Hb_007462_020--Hb_004017_030 Hb_003767_060 Hb_003767_060 Hb_007462_020--Hb_003767_060 Hb_001369_340 Hb_001369_340 Hb_007462_020--Hb_001369_340 Hb_000460_040 Hb_000460_040 Hb_007462_020--Hb_000460_040 Hb_000155_020 Hb_000155_020 Hb_007462_020--Hb_000155_020 Hb_000025_700 Hb_000025_700 Hb_007462_020--Hb_000025_700 Hb_000123_360--Hb_000358_160 Hb_000123_360--Hb_110266_010 Hb_000123_360--Hb_001442_050 Hb_000123_360--Hb_002007_120 Hb_000123_360--Hb_000345_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.74683 179.376 1523.8 465.357 1.94292 4.4809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.8277 2.62785 0.132024 66.2721 1247.99

CAGE analysis