Hb_001442_050

Information

Type -
Description -
Location Contig1442: 62722-64297
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23850g
description POPTRDRAFT_416054; hypothetical protein
nr
ID XP_012077211.1
description PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
swissprot
ID Q84VQ4
description NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Arabidopsis thaliana GN=ndhU PE=1 SV=1
trembl
ID A0A067KQD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07610 PE=4 SV=1
Gene Ontology
ID GO:0009535
description nad h-quinone oxidoreductase subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11650: 62720-64263 , PASA_asmbl_11651: 62720-63537
cDNA
(Sanger)
(ID:Location)		 021_C09.ab1: 62720-63537 , 050_K10.ab1: 62750-64060 , 051_F12.ab1: 62750-64145 , 053_G02.ab1: 62720-64188

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001442_050 0.0 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
2 Hb_002027_100 0.0700292562 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000345_400 0.0830329679 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000358_160 0.0951773746 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
5 Hb_000123_360 0.0973736863 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_110266_010 0.1047535492 - - PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]
7 Hb_001638_190 0.104778927 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
8 Hb_000928_100 0.1062833281 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
9 Hb_002007_120 0.1077987071 - - PREDICTED: psbP domain-containing protein 7, chloroplastic [Jatropha curcas]
10 Hb_005116_130 0.1096539755 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
11 Hb_000294_020 0.1141261971 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
12 Hb_092516_010 0.1142878173 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
13 Hb_000110_240 0.1162257785 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
14 Hb_046590_010 0.1177769378 - - Cycloeucalenol cycloisomerase, putative [Ricinus communis]
15 Hb_001655_080 0.1182105335 - - Purple acid phosphatase precursor, putative [Ricinus communis]
16 Hb_000483_470 0.1219851669 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
17 Hb_001916_110 0.1221048336 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
18 Hb_000188_070 0.1242306965 - - calcineurin-like phosphoesterase [Manihot esculenta]
19 Hb_000313_250 0.1249412955 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
20 Hb_022167_010 0.1276499979 - - Kinase, putative isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_001442_050 Hb_001442_050 Hb_002027_100 Hb_002027_100 Hb_001442_050--Hb_002027_100 Hb_000345_400 Hb_000345_400 Hb_001442_050--Hb_000345_400 Hb_000358_160 Hb_000358_160 Hb_001442_050--Hb_000358_160 Hb_000123_360 Hb_000123_360 Hb_001442_050--Hb_000123_360 Hb_110266_010 Hb_110266_010 Hb_001442_050--Hb_110266_010 Hb_001638_190 Hb_001638_190 Hb_001442_050--Hb_001638_190 Hb_000483_470 Hb_000483_470 Hb_002027_100--Hb_000483_470 Hb_101133_040 Hb_101133_040 Hb_002027_100--Hb_101133_040 Hb_002027_100--Hb_000345_400 Hb_060534_010 Hb_060534_010 Hb_002027_100--Hb_060534_010 Hb_000294_020 Hb_000294_020 Hb_002027_100--Hb_000294_020 Hb_000345_400--Hb_001638_190 Hb_000345_400--Hb_000294_020 Hb_000345_400--Hb_000358_160 Hb_092516_010 Hb_092516_010 Hb_000345_400--Hb_092516_010 Hb_000345_400--Hb_110266_010 Hb_000358_160--Hb_092516_010 Hb_001655_080 Hb_001655_080 Hb_000358_160--Hb_001655_080 Hb_027684_010 Hb_027684_010 Hb_000358_160--Hb_027684_010 Hb_021443_060 Hb_021443_060 Hb_000358_160--Hb_021443_060 Hb_000313_250 Hb_000313_250 Hb_000358_160--Hb_000313_250 Hb_000123_360--Hb_000358_160 Hb_000123_360--Hb_110266_010 Hb_002007_120 Hb_002007_120 Hb_000123_360--Hb_002007_120 Hb_000123_360--Hb_000345_400 Hb_000638_220 Hb_000638_220 Hb_000123_360--Hb_000638_220 Hb_110266_010--Hb_002007_120 Hb_110266_010--Hb_092516_010 Hb_110266_010--Hb_000313_250 Hb_048141_050 Hb_048141_050 Hb_110266_010--Hb_048141_050 Hb_110266_010--Hb_000294_020 Hb_078954_030 Hb_078954_030 Hb_110266_010--Hb_078954_030 Hb_000188_070 Hb_000188_070 Hb_001638_190--Hb_000188_070 Hb_000692_060 Hb_000692_060 Hb_001638_190--Hb_000692_060 Hb_001958_030 Hb_001958_030 Hb_001638_190--Hb_001958_030 Hb_001638_190--Hb_001655_080 Hb_001638_190--Hb_000358_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.70557 20.2655 180.477 28.9664 1.7723 1.54544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.65855 1.77008 0.679838 6.33367 101.642

CAGE analysis