Hb_001343_030

Information

Type -
Description -
Location Contig1343: 30411-31866
Sequence    

Annotation

kegg
ID rcu:RCOM_0261230
description hypothetical protein
nr
ID XP_012077760.1
description PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
swissprot
ID Q9LVM2
description NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Arabidopsis thaliana GN=ndhN PE=2 SV=1
trembl
ID A0A067LEK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17275 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nad h-quinone oxidoreductase subunit organellar chromatophore-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09734: 30461-31749
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001343_030 0.0 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
2 Hb_000962_090 0.052305627 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
3 Hb_001975_120 0.0575845908 - - chlorophyll a/b binding protein type II [Glycine max]
4 Hb_002272_210 0.0588057735 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
5 Hb_000530_040 0.0672261541 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
6 Hb_005211_080 0.0677340234 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
7 Hb_000359_050 0.0681296128 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
8 Hb_001675_090 0.0681440457 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
9 Hb_005000_110 0.0697772039 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
10 Hb_146225_020 0.073113145 - - chlorophyll A/B binding protein, putative [Ricinus communis]
11 Hb_000719_030 0.0736174781 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
12 Hb_007597_030 0.0743030357 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000608_270 0.0758914771 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009476_030 0.0759028113 - - fatty acid desaturase [Manihot esculenta]
15 Hb_001014_240 0.0762619476 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
16 Hb_001424_010 0.0763460607 - - serine/threonine protein kinase, putative [Ricinus communis]
17 Hb_001006_150 0.0767791472 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
18 Hb_003623_080 0.0770404545 - - PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
19 Hb_013726_060 0.0787747172 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
20 Hb_000808_130 0.0798425285 - - 3-5 exonuclease, putative [Ricinus communis]

Gene co-expression network

sample Hb_001343_030 Hb_001343_030 Hb_000962_090 Hb_000962_090 Hb_001343_030--Hb_000962_090 Hb_001975_120 Hb_001975_120 Hb_001343_030--Hb_001975_120 Hb_002272_210 Hb_002272_210 Hb_001343_030--Hb_002272_210 Hb_000530_040 Hb_000530_040 Hb_001343_030--Hb_000530_040 Hb_005211_080 Hb_005211_080 Hb_001343_030--Hb_005211_080 Hb_000359_050 Hb_000359_050 Hb_001343_030--Hb_000359_050 Hb_000962_090--Hb_005211_080 Hb_000962_090--Hb_000359_050 Hb_001014_240 Hb_001014_240 Hb_000962_090--Hb_001014_240 Hb_005329_010 Hb_005329_010 Hb_000962_090--Hb_005329_010 Hb_001006_150 Hb_001006_150 Hb_000962_090--Hb_001006_150 Hb_001975_120--Hb_000530_040 Hb_000697_030 Hb_000697_030 Hb_001975_120--Hb_000697_030 Hb_005345_020 Hb_005345_020 Hb_001975_120--Hb_005345_020 Hb_003573_030 Hb_003573_030 Hb_001975_120--Hb_003573_030 Hb_009476_030 Hb_009476_030 Hb_001975_120--Hb_009476_030 Hb_001424_010 Hb_001424_010 Hb_001975_120--Hb_001424_010 Hb_003623_080 Hb_003623_080 Hb_002272_210--Hb_003623_080 Hb_007597_030 Hb_007597_030 Hb_002272_210--Hb_007597_030 Hb_001006_040 Hb_001006_040 Hb_002272_210--Hb_001006_040 Hb_146225_020 Hb_146225_020 Hb_002272_210--Hb_146225_020 Hb_002272_210--Hb_001975_120 Hb_000530_040--Hb_001424_010 Hb_000530_040--Hb_000697_030 Hb_000530_040--Hb_003573_030 Hb_000069_220 Hb_000069_220 Hb_000530_040--Hb_000069_220 Hb_078954_030 Hb_078954_030 Hb_000530_040--Hb_078954_030 Hb_005211_080--Hb_000359_050 Hb_005211_080--Hb_001006_150 Hb_005211_080--Hb_005329_010 Hb_004306_090 Hb_004306_090 Hb_005211_080--Hb_004306_090 Hb_001766_160 Hb_001766_160 Hb_005211_080--Hb_001766_160 Hb_000359_050--Hb_001006_150 Hb_000340_280 Hb_000340_280 Hb_000359_050--Hb_000340_280 Hb_000359_050--Hb_001014_240 Hb_003651_030 Hb_003651_030 Hb_000359_050--Hb_003651_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0693427 2.9948 46.8524 15.7921 0.0487233 0.0361915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.197919 0.217964 0.173955 0.561091 47.16

CAGE analysis