Hb_003387_010

Information

Type -
Description -
Location Contig3387: 13074-14759
Sequence    

Annotation

kegg
ID rcu:RCOM_0220900
description serine/threonine protein kinase, putative (EC:2.7.11.1 2.7.11.13)
nr
ID XP_012447344.1
description PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
swissprot
ID Q64FQ2
description Protein kinase PINOID 2 OS=Arabidopsis thaliana GN=PID2 PE=1 SV=1
trembl
ID A0A0D2UES4
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G019600 PE=4 SV=1
Gene Ontology
ID GO:0004697
description protein kinase pinoid 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35401: 12968-14737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003387_010 0.0 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
2 Hb_002918_170 0.0508764514 - - PREDICTED: MACPF domain-containing protein NSL1 [Jatropha curcas]
3 Hb_002710_040 0.0880158272 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
4 Hb_089736_010 0.0948403728 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
5 Hb_001958_030 0.0950569147 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
6 Hb_004223_120 0.0966576067 - - PREDICTED: protein SPA, chloroplastic [Jatropha curcas]
7 Hb_000084_210 0.0997614226 - - hypothetical protein POPTR_0016s08050g [Populus trichocarpa]
8 Hb_000188_070 0.1041938498 - - calcineurin-like phosphoesterase [Manihot esculenta]
9 Hb_054615_010 0.1064466619 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
10 Hb_033834_020 0.1072661859 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009293_030 0.1102941179 - - PREDICTED: salicylate carboxymethyltransferase [Jatropha curcas]
12 Hb_163950_090 0.1116067429 - - PREDICTED: traB domain-containing protein isoform X1 [Jatropha curcas]
13 Hb_000163_140 0.1117096103 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
14 Hb_001369_590 0.113738402 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
15 Hb_000187_100 0.1174353912 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
16 Hb_001123_340 0.1184007428 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
17 Hb_005365_040 0.1189244237 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
18 Hb_104014_010 0.120015723 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
19 Hb_074240_030 0.122217261 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
20 Hb_000362_080 0.1267152955 - - hypothetical protein EUTSA_v10027329mg, partial [Eutrema salsugineum]

Gene co-expression network

sample Hb_003387_010 Hb_003387_010 Hb_002918_170 Hb_002918_170 Hb_003387_010--Hb_002918_170 Hb_002710_040 Hb_002710_040 Hb_003387_010--Hb_002710_040 Hb_089736_010 Hb_089736_010 Hb_003387_010--Hb_089736_010 Hb_001958_030 Hb_001958_030 Hb_003387_010--Hb_001958_030 Hb_004223_120 Hb_004223_120 Hb_003387_010--Hb_004223_120 Hb_000084_210 Hb_000084_210 Hb_003387_010--Hb_000084_210 Hb_002918_170--Hb_001958_030 Hb_000188_070 Hb_000188_070 Hb_002918_170--Hb_000188_070 Hb_002918_170--Hb_089736_010 Hb_000163_140 Hb_000163_140 Hb_002918_170--Hb_000163_140 Hb_104014_010 Hb_104014_010 Hb_002918_170--Hb_104014_010 Hb_002710_040--Hb_001958_030 Hb_002710_040--Hb_000188_070 Hb_163950_090 Hb_163950_090 Hb_002710_040--Hb_163950_090 Hb_004218_060 Hb_004218_060 Hb_002710_040--Hb_004218_060 Hb_001942_060 Hb_001942_060 Hb_002710_040--Hb_001942_060 Hb_054615_010 Hb_054615_010 Hb_089736_010--Hb_054615_010 Hb_088118_010 Hb_088118_010 Hb_089736_010--Hb_088118_010 Hb_001123_340 Hb_001123_340 Hb_089736_010--Hb_001123_340 Hb_074240_030 Hb_074240_030 Hb_089736_010--Hb_074240_030 Hb_001926_010 Hb_001926_010 Hb_089736_010--Hb_001926_010 Hb_001958_030--Hb_000188_070 Hb_000692_060 Hb_000692_060 Hb_001958_030--Hb_000692_060 Hb_033834_020 Hb_033834_020 Hb_001958_030--Hb_033834_020 Hb_001638_190 Hb_001638_190 Hb_001958_030--Hb_001638_190 Hb_000187_100 Hb_000187_100 Hb_004223_120--Hb_000187_100 Hb_009293_030 Hb_009293_030 Hb_004223_120--Hb_009293_030 Hb_030565_020 Hb_030565_020 Hb_004223_120--Hb_030565_020 Hb_002259_020 Hb_002259_020 Hb_004223_120--Hb_002259_020 Hb_006649_100 Hb_006649_100 Hb_004223_120--Hb_006649_100 Hb_001401_050 Hb_001401_050 Hb_004223_120--Hb_001401_050 Hb_002561_040 Hb_002561_040 Hb_000084_210--Hb_002561_040 Hb_002499_050 Hb_002499_050 Hb_000084_210--Hb_002499_050 Hb_004627_050 Hb_004627_050 Hb_000084_210--Hb_004627_050 Hb_001369_590 Hb_001369_590 Hb_000084_210--Hb_001369_590 Hb_000084_210--Hb_002259_020 Hb_011512_100 Hb_011512_100 Hb_000084_210--Hb_011512_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.252977 7.34546 0.943679 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.255278 2.24334

CAGE analysis