Hb_006649_100

Information

Type -
Description -
Location Contig6649: 53008-55906
Sequence    

Annotation

kegg
ID rcu:RCOM_1095430
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_002524651.1
description cinnamoyl-CoA reductase, putative [Ricinus communis]
swissprot
ID Q9S9N9
description Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1
trembl
ID B9SF82
description Cinnamoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_1095430 PE=3 SV=1
Gene Ontology
ID GO:0003854
description cinnamoyl- reductase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53162: 53204-55846 , PASA_asmbl_53165: 36007-55846
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006649_100 0.0 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
2 Hb_003411_070 0.0655442774 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
3 Hb_005375_100 0.0689787798 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
4 Hb_009293_030 0.0746311958 - - PREDICTED: salicylate carboxymethyltransferase [Jatropha curcas]
5 Hb_004223_120 0.0750374178 - - PREDICTED: protein SPA, chloroplastic [Jatropha curcas]
6 Hb_000173_330 0.0753597736 - - PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera]
7 Hb_003702_010 0.0785079871 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
8 Hb_031862_190 0.0800260126 - - -
9 Hb_008195_100 0.0864646551 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
10 Hb_000187_100 0.0868851488 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
11 Hb_000023_170 0.0874090901 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
12 Hb_000853_340 0.0904017851 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X2 [Populus euphratica]
13 Hb_001329_060 0.0909751916 - - Polygalacturonase precursor, putative [Ricinus communis]
14 Hb_005357_210 0.0930632459 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
15 Hb_009189_090 0.0936796248 - - protein phosphatase-2c, putative [Ricinus communis]
16 Hb_155874_020 0.0937502255 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
17 Hb_001946_070 0.0956408746 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
18 Hb_000347_170 0.0973378106 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
19 Hb_025048_050 0.0987047436 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
20 Hb_000431_080 0.099284826 - - PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]

Gene co-expression network

sample Hb_006649_100 Hb_006649_100 Hb_003411_070 Hb_003411_070 Hb_006649_100--Hb_003411_070 Hb_005375_100 Hb_005375_100 Hb_006649_100--Hb_005375_100 Hb_009293_030 Hb_009293_030 Hb_006649_100--Hb_009293_030 Hb_004223_120 Hb_004223_120 Hb_006649_100--Hb_004223_120 Hb_000173_330 Hb_000173_330 Hb_006649_100--Hb_000173_330 Hb_003702_010 Hb_003702_010 Hb_006649_100--Hb_003702_010 Hb_031862_190 Hb_031862_190 Hb_003411_070--Hb_031862_190 Hb_001329_060 Hb_001329_060 Hb_003411_070--Hb_001329_060 Hb_000751_010 Hb_000751_010 Hb_003411_070--Hb_000751_010 Hb_000735_190 Hb_000735_190 Hb_003411_070--Hb_000735_190 Hb_001946_070 Hb_001946_070 Hb_003411_070--Hb_001946_070 Hb_003411_070--Hb_009293_030 Hb_008195_100 Hb_008195_100 Hb_005375_100--Hb_008195_100 Hb_132840_060 Hb_132840_060 Hb_005375_100--Hb_132840_060 Hb_005375_100--Hb_000173_330 Hb_155874_020 Hb_155874_020 Hb_005375_100--Hb_155874_020 Hb_008032_010 Hb_008032_010 Hb_005375_100--Hb_008032_010 Hb_009293_030--Hb_031862_190 Hb_009846_010 Hb_009846_010 Hb_009293_030--Hb_009846_010 Hb_009293_030--Hb_001329_060 Hb_009293_030--Hb_001946_070 Hb_009293_030--Hb_004223_120 Hb_000187_100 Hb_000187_100 Hb_004223_120--Hb_000187_100 Hb_030565_020 Hb_030565_020 Hb_004223_120--Hb_030565_020 Hb_002259_020 Hb_002259_020 Hb_004223_120--Hb_002259_020 Hb_001401_050 Hb_001401_050 Hb_004223_120--Hb_001401_050 Hb_000173_330--Hb_003702_010 Hb_000853_340 Hb_000853_340 Hb_000173_330--Hb_000853_340 Hb_000173_330--Hb_155874_020 Hb_000023_170 Hb_000023_170 Hb_000173_330--Hb_000023_170 Hb_000173_330--Hb_008195_100 Hb_009189_090 Hb_009189_090 Hb_000173_330--Hb_009189_090 Hb_003702_010--Hb_000023_170 Hb_003702_010--Hb_009189_090 Hb_003702_010--Hb_155874_020 Hb_003702_010--Hb_132840_060 Hb_005357_210 Hb_005357_210 Hb_003702_010--Hb_005357_210 Hb_003702_010--Hb_000853_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.015111 0.145531 41.711 3.99195 0.0283074 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0689105 0.108422 0.152254 0.184158 10.6209

CAGE analysis