Hb_001401_050

Information

Type -
Description -
Location Contig1401: 39018-40342
Sequence    

Annotation

kegg
ID rcu:RCOM_1590680
description chlorophyll A/B binding protein, putative
nr
ID XP_012071664.1
description PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Jatropha curcas]
swissprot
ID P27521
description Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA4 PE=1 SV=1
trembl
ID A0A067L1H8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04265 PE=4 SV=1
Gene Ontology
ID GO:0009523
description chlorophyll a-b binding protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10920: 38956-40387
cDNA
(Sanger)
(ID:Location)		 024_J07.ab1: 38956-40012

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001401_050 0.0 - - PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Jatropha curcas]
2 Hb_004223_120 0.0801026144 - - PREDICTED: protein SPA, chloroplastic [Jatropha curcas]
3 Hb_030565_020 0.0857096325 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
4 Hb_008032_010 0.0982193807 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
5 Hb_132840_060 0.0984483195 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
6 Hb_006355_100 0.0988362925 - - hypothetical protein glysoja_002455 [Glycine soja]
7 Hb_003729_050 0.0999039253 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
8 Hb_063584_010 0.1006901534 - - hypothetical protein JCGZ_10530 [Jatropha curcas]
9 Hb_009189_090 0.1036680326 - - protein phosphatase-2c, putative [Ricinus communis]
10 Hb_000023_170 0.1067967448 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
11 Hb_002701_100 0.107157597 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
12 Hb_006649_100 0.1080985696 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
13 Hb_155874_020 0.1088302646 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
14 Hb_003702_010 0.1103737188 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
15 Hb_008195_100 0.1113743522 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
16 Hb_000187_100 0.1118168836 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
17 Hb_005375_100 0.1120136215 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
18 Hb_000173_330 0.1151416208 - - PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera]
19 Hb_002253_020 0.1175208949 - - PREDICTED: callose synthase 5 [Jatropha curcas]
20 Hb_009293_030 0.1192802615 - - PREDICTED: salicylate carboxymethyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_001401_050 Hb_001401_050 Hb_004223_120 Hb_004223_120 Hb_001401_050--Hb_004223_120 Hb_030565_020 Hb_030565_020 Hb_001401_050--Hb_030565_020 Hb_008032_010 Hb_008032_010 Hb_001401_050--Hb_008032_010 Hb_132840_060 Hb_132840_060 Hb_001401_050--Hb_132840_060 Hb_006355_100 Hb_006355_100 Hb_001401_050--Hb_006355_100 Hb_003729_050 Hb_003729_050 Hb_001401_050--Hb_003729_050 Hb_000187_100 Hb_000187_100 Hb_004223_120--Hb_000187_100 Hb_009293_030 Hb_009293_030 Hb_004223_120--Hb_009293_030 Hb_004223_120--Hb_030565_020 Hb_002259_020 Hb_002259_020 Hb_004223_120--Hb_002259_020 Hb_006649_100 Hb_006649_100 Hb_004223_120--Hb_006649_100 Hb_011716_140 Hb_011716_140 Hb_030565_020--Hb_011716_140 Hb_002253_020 Hb_002253_020 Hb_030565_020--Hb_002253_020 Hb_011512_100 Hb_011512_100 Hb_030565_020--Hb_011512_100 Hb_030565_020--Hb_002259_020 Hb_002078_280 Hb_002078_280 Hb_030565_020--Hb_002078_280 Hb_008032_010--Hb_006355_100 Hb_008032_010--Hb_132840_060 Hb_008032_010--Hb_003729_050 Hb_009189_090 Hb_009189_090 Hb_008032_010--Hb_009189_090 Hb_000023_170 Hb_000023_170 Hb_008032_010--Hb_000023_170 Hb_155874_020 Hb_155874_020 Hb_008032_010--Hb_155874_020 Hb_132840_060--Hb_155874_020 Hb_132840_060--Hb_003729_050 Hb_132840_060--Hb_009189_090 Hb_132840_060--Hb_000023_170 Hb_132840_060--Hb_006355_100 Hb_006355_100--Hb_003729_050 Hb_006355_100--Hb_009189_090 Hb_002701_100 Hb_002701_100 Hb_006355_100--Hb_002701_100 Hb_006355_100--Hb_000023_170 Hb_003729_050--Hb_002701_100 Hb_003729_050--Hb_155874_020 Hb_003729_050--Hb_009189_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.11334 3.95423 259.354 11.3938 0 0.399472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.173164 0 0 2.12328 77.2001

CAGE analysis