Hb_005375_100

Information

Type transcription factor
Description TF Family: bHLH
Location Contig5375: 87452-89605
Sequence    

Annotation

kegg
ID rcu:RCOM_1339970
description DNA binding protein, putative
nr
ID XP_012083091.1
description PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
swissprot
ID Q700E4
description Transcription factor bHLH67 OS=Arabidopsis thaliana GN=BHLH67 PE=2 SV=1
trembl
ID B9RNL4
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1339970 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh57 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47625: 87396-89554
cDNA
(Sanger)
(ID:Location)		 004_A07.ab1: 88240-89554

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005375_100 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
2 Hb_006649_100 0.0689787798 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
3 Hb_008195_100 0.0724073511 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
4 Hb_132840_060 0.0782342369 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
5 Hb_000173_330 0.0799531023 - - PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera]
6 Hb_155874_020 0.0806170996 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
7 Hb_008032_010 0.0821983133 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
8 Hb_000023_170 0.0824296624 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
9 Hb_009189_090 0.0832115285 - - protein phosphatase-2c, putative [Ricinus communis]
10 Hb_003702_010 0.0838981707 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
11 Hb_003729_050 0.0882075807 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
12 Hb_006355_100 0.0889114365 - - hypothetical protein glysoja_002455 [Glycine soja]
13 Hb_000853_340 0.093649115 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X2 [Populus euphratica]
14 Hb_005357_210 0.1039311434 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
15 Hb_002701_100 0.1074082 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
16 Hb_017358_060 0.1099918342 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
17 Hb_001401_050 0.1120136215 - - PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Jatropha curcas]
18 Hb_019762_030 0.1125359824 - - hypothetical protein POPTR_0002s08720g [Populus trichocarpa]
19 Hb_003411_070 0.1126505618 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
20 Hb_063584_010 0.1140153883 - - hypothetical protein JCGZ_10530 [Jatropha curcas]

Gene co-expression network

sample Hb_005375_100 Hb_005375_100 Hb_006649_100 Hb_006649_100 Hb_005375_100--Hb_006649_100 Hb_008195_100 Hb_008195_100 Hb_005375_100--Hb_008195_100 Hb_132840_060 Hb_132840_060 Hb_005375_100--Hb_132840_060 Hb_000173_330 Hb_000173_330 Hb_005375_100--Hb_000173_330 Hb_155874_020 Hb_155874_020 Hb_005375_100--Hb_155874_020 Hb_008032_010 Hb_008032_010 Hb_005375_100--Hb_008032_010 Hb_003411_070 Hb_003411_070 Hb_006649_100--Hb_003411_070 Hb_009293_030 Hb_009293_030 Hb_006649_100--Hb_009293_030 Hb_004223_120 Hb_004223_120 Hb_006649_100--Hb_004223_120 Hb_006649_100--Hb_000173_330 Hb_003702_010 Hb_003702_010 Hb_006649_100--Hb_003702_010 Hb_008195_100--Hb_155874_020 Hb_008195_100--Hb_003702_010 Hb_000023_170 Hb_000023_170 Hb_008195_100--Hb_000023_170 Hb_008195_100--Hb_132840_060 Hb_000853_340 Hb_000853_340 Hb_008195_100--Hb_000853_340 Hb_009189_090 Hb_009189_090 Hb_008195_100--Hb_009189_090 Hb_132840_060--Hb_008032_010 Hb_132840_060--Hb_155874_020 Hb_003729_050 Hb_003729_050 Hb_132840_060--Hb_003729_050 Hb_132840_060--Hb_009189_090 Hb_132840_060--Hb_000023_170 Hb_006355_100 Hb_006355_100 Hb_132840_060--Hb_006355_100 Hb_000173_330--Hb_003702_010 Hb_000173_330--Hb_000853_340 Hb_000173_330--Hb_155874_020 Hb_000173_330--Hb_000023_170 Hb_000173_330--Hb_008195_100 Hb_000173_330--Hb_009189_090 Hb_155874_020--Hb_000853_340 Hb_155874_020--Hb_003702_010 Hb_155874_020--Hb_000023_170 Hb_155874_020--Hb_008032_010 Hb_008032_010--Hb_006355_100 Hb_008032_010--Hb_003729_050 Hb_008032_010--Hb_009189_090 Hb_008032_010--Hb_000023_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0262004 0.0238723 46.1736 2.58841 0.0122678 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.149162 0.281645 0.22081 0.0374538 12.1478

CAGE analysis