Hb_002918_170

Information

Type -
Description -
Location Contig2918: 176741-183696
Sequence    

Annotation

kegg
ID rcu:RCOM_1673650
description hypothetical protein
nr
ID XP_012091653.1
description PREDICTED: MACPF domain-containing protein NSL1 [Jatropha curcas]
swissprot
ID Q9SGN6
description MACPF domain-containing protein NSL1 OS=Arabidopsis thaliana GN=NSL1 PE=2 SV=1
trembl
ID A0A067JLW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21471 PE=4 SV=1
Gene Ontology
ID GO:0005737
description macpf domain-containing protein nsl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30609: 181652-181939 , PASA_asmbl_30610: 176731-183633
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_170 0.0 - - PREDICTED: MACPF domain-containing protein NSL1 [Jatropha curcas]
2 Hb_003387_010 0.0508764514 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
3 Hb_001958_030 0.0985433229 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
4 Hb_000188_070 0.1000055515 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_089736_010 0.1017174943 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
6 Hb_000163_140 0.1023677961 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
7 Hb_104014_010 0.104149973 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
8 Hb_033834_020 0.1046331005 - - conserved hypothetical protein [Ricinus communis]
9 Hb_054615_010 0.1134492899 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
10 Hb_002710_040 0.1155828706 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
11 Hb_003077_010 0.1170273333 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_001123_340 0.1187286508 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
13 Hb_001218_060 0.1194101643 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005116_130 0.1208496889 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
15 Hb_000445_310 0.1220904628 - - hypothetical protein B456_011G218000 [Gossypium raimondii]
16 Hb_001606_040 0.128455109 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
17 Hb_004223_120 0.1292123003 - - PREDICTED: protein SPA, chloroplastic [Jatropha curcas]
18 Hb_000152_650 0.1312439418 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
19 Hb_000084_210 0.1318161676 - - hypothetical protein POPTR_0016s08050g [Populus trichocarpa]
20 Hb_000692_060 0.1329450091 - - calcium-dependent protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002918_170 Hb_002918_170 Hb_003387_010 Hb_003387_010 Hb_002918_170--Hb_003387_010 Hb_001958_030 Hb_001958_030 Hb_002918_170--Hb_001958_030 Hb_000188_070 Hb_000188_070 Hb_002918_170--Hb_000188_070 Hb_089736_010 Hb_089736_010 Hb_002918_170--Hb_089736_010 Hb_000163_140 Hb_000163_140 Hb_002918_170--Hb_000163_140 Hb_104014_010 Hb_104014_010 Hb_002918_170--Hb_104014_010 Hb_002710_040 Hb_002710_040 Hb_003387_010--Hb_002710_040 Hb_003387_010--Hb_089736_010 Hb_003387_010--Hb_001958_030 Hb_004223_120 Hb_004223_120 Hb_003387_010--Hb_004223_120 Hb_000084_210 Hb_000084_210 Hb_003387_010--Hb_000084_210 Hb_001958_030--Hb_000188_070 Hb_000692_060 Hb_000692_060 Hb_001958_030--Hb_000692_060 Hb_001958_030--Hb_002710_040 Hb_033834_020 Hb_033834_020 Hb_001958_030--Hb_033834_020 Hb_001638_190 Hb_001638_190 Hb_001958_030--Hb_001638_190 Hb_000188_070--Hb_033834_020 Hb_000188_070--Hb_000692_060 Hb_007254_010 Hb_007254_010 Hb_000188_070--Hb_007254_010 Hb_000188_070--Hb_001638_190 Hb_000928_100 Hb_000928_100 Hb_000188_070--Hb_000928_100 Hb_054615_010 Hb_054615_010 Hb_089736_010--Hb_054615_010 Hb_088118_010 Hb_088118_010 Hb_089736_010--Hb_088118_010 Hb_001123_340 Hb_001123_340 Hb_089736_010--Hb_001123_340 Hb_074240_030 Hb_074240_030 Hb_089736_010--Hb_074240_030 Hb_001926_010 Hb_001926_010 Hb_089736_010--Hb_001926_010 Hb_000445_310 Hb_000445_310 Hb_000163_140--Hb_000445_310 Hb_000163_140--Hb_001958_030 Hb_000300_070 Hb_000300_070 Hb_000163_140--Hb_000300_070 Hb_000163_140--Hb_003387_010 Hb_000163_140--Hb_000188_070 Hb_000051_150 Hb_000051_150 Hb_104014_010--Hb_000051_150 Hb_001913_070 Hb_001913_070 Hb_104014_010--Hb_001913_070 Hb_000152_650 Hb_000152_650 Hb_104014_010--Hb_000152_650 Hb_010422_020 Hb_010422_020 Hb_104014_010--Hb_010422_020 Hb_001369_590 Hb_001369_590 Hb_104014_010--Hb_001369_590 Hb_005365_040 Hb_005365_040 Hb_104014_010--Hb_005365_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.22194 39.6564 4.46029 0 0.0094244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.70981 10.3474

CAGE analysis