Hb_002710_040

Information

Type -
Description -
Location Contig2710: 40724-42175
Sequence    

Annotation

kegg
ID rcu:RCOM_1589280
description cyclin d, putative
nr
ID XP_012068292.1
description PREDICTED: cyclin-D3-3-like [Jatropha curcas]
swissprot
ID P42753
description Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3
trembl
ID A0A067KZR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16093 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28423: 40566-42418
cDNA
(Sanger)
(ID:Location)		 008_K21.ab1: 40575-41141 , 017_D08.ab1: 40564-41209 , 020_B08.ab1: 40599-41528 , 021_D08.ab1: 40566-41449 , 045_A03.ab1: 40566-41411

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002710_040 0.0 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
2 Hb_001958_030 0.0725958513 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
3 Hb_003387_010 0.0880158272 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
4 Hb_000188_070 0.090206878 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_163950_090 0.0931699118 - - PREDICTED: traB domain-containing protein isoform X1 [Jatropha curcas]
6 Hb_004218_060 0.0936927792 - - annexin [Manihot esculenta]
7 Hb_001942_060 0.0951458474 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000084_210 0.0963991545 - - hypothetical protein POPTR_0016s08050g [Populus trichocarpa]
9 Hb_000692_060 0.0992676467 - - calcium-dependent protein kinase, putative [Ricinus communis]
10 Hb_092516_010 0.0992867018 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
11 Hb_022167_010 0.09971656 - - Kinase, putative isoform 2 [Theobroma cacao]
12 Hb_033834_020 0.1008268482 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000358_160 0.1035670446 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
14 Hb_002066_100 0.1042380249 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
15 Hb_019053_040 0.1043534546 - - cytochrome P450, putative [Ricinus communis]
16 Hb_000749_140 0.107132615 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
17 Hb_000928_100 0.10896927 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
18 Hb_001655_080 0.1096673485 - - Purple acid phosphatase precursor, putative [Ricinus communis]
19 Hb_000282_020 0.1125338395 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
20 Hb_005116_130 0.1135491623 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002710_040 Hb_002710_040 Hb_001958_030 Hb_001958_030 Hb_002710_040--Hb_001958_030 Hb_003387_010 Hb_003387_010 Hb_002710_040--Hb_003387_010 Hb_000188_070 Hb_000188_070 Hb_002710_040--Hb_000188_070 Hb_163950_090 Hb_163950_090 Hb_002710_040--Hb_163950_090 Hb_004218_060 Hb_004218_060 Hb_002710_040--Hb_004218_060 Hb_001942_060 Hb_001942_060 Hb_002710_040--Hb_001942_060 Hb_001958_030--Hb_000188_070 Hb_000692_060 Hb_000692_060 Hb_001958_030--Hb_000692_060 Hb_033834_020 Hb_033834_020 Hb_001958_030--Hb_033834_020 Hb_001638_190 Hb_001638_190 Hb_001958_030--Hb_001638_190 Hb_001958_030--Hb_003387_010 Hb_002918_170 Hb_002918_170 Hb_003387_010--Hb_002918_170 Hb_089736_010 Hb_089736_010 Hb_003387_010--Hb_089736_010 Hb_004223_120 Hb_004223_120 Hb_003387_010--Hb_004223_120 Hb_000084_210 Hb_000084_210 Hb_003387_010--Hb_000084_210 Hb_000188_070--Hb_033834_020 Hb_000188_070--Hb_000692_060 Hb_007254_010 Hb_007254_010 Hb_000188_070--Hb_007254_010 Hb_000188_070--Hb_001638_190 Hb_000928_100 Hb_000928_100 Hb_000188_070--Hb_000928_100 Hb_005736_120 Hb_005736_120 Hb_163950_090--Hb_005736_120 Hb_163950_090--Hb_001942_060 Hb_000749_140 Hb_000749_140 Hb_163950_090--Hb_000749_140 Hb_163950_090--Hb_004218_060 Hb_145188_010 Hb_145188_010 Hb_163950_090--Hb_145188_010 Hb_004218_060--Hb_005736_120 Hb_004218_060--Hb_145188_010 Hb_004218_060--Hb_001942_060 Hb_007262_010 Hb_007262_010 Hb_004218_060--Hb_007262_010 Hb_001233_050 Hb_001233_050 Hb_001942_060--Hb_001233_050 Hb_001942_060--Hb_000749_140 Hb_101133_030 Hb_101133_030 Hb_001942_060--Hb_101133_030 Hb_002078_280 Hb_002078_280 Hb_001942_060--Hb_002078_280 Hb_000821_030 Hb_000821_030 Hb_001942_060--Hb_000821_030 Hb_004627_050 Hb_004627_050 Hb_001942_060--Hb_004627_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.402417 3.31242 72.4018 14.4296 0.0186295 0.0213782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.10021 31.8674

CAGE analysis