Hb_005736_120

Information

Type -
Description -
Location Contig5736: 118256-122514
Sequence    

Annotation

kegg
ID tcc:TCM_035352
description Phosphoenolpyruvate carboxylase family protein
nr
ID XP_012482490.1
description PREDICTED: carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic [Gossypium raimondii]
swissprot
ID O49290
description Carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic OS=Arabidopsis thaliana GN=At1g77060 PE=2 SV=2
trembl
ID A0A0D2N9C4
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G083900 PE=4 SV=1
Gene Ontology
ID GO:0009570
description carboxyvinyl-carboxyphosphonate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49523: 118362-122450 , PASA_asmbl_49524: 119286-119638
cDNA
(Sanger)
(ID:Location)		 030_E12.ab1: 118349-121869

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005736_120 0.0 - - PREDICTED: carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic [Gossypium raimondii]
2 Hb_163950_090 0.0794776883 - - PREDICTED: traB domain-containing protein isoform X1 [Jatropha curcas]
3 Hb_004218_060 0.0822130347 - - annexin [Manihot esculenta]
4 Hb_001942_060 0.0841516221 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000749_140 0.0929601766 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
6 Hb_001233_050 0.0977298902 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
7 Hb_003683_170 0.0986331978 - - conserved hypothetical protein [Ricinus communis]
8 Hb_101133_030 0.1037104435 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
9 Hb_145188_010 0.10418778 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
10 Hb_007262_010 0.1052267183 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X2 [Jatropha curcas]
11 Hb_003750_110 0.1052411602 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
12 Hb_000836_620 0.1087997769 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
13 Hb_000030_070 0.1100528463 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001916_110 0.1113659081 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
15 Hb_002078_280 0.1152294057 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
16 Hb_002710_040 0.1178636656 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
17 Hb_001377_080 0.1208265307 - - PREDICTED: uncharacterized protein LOC105642864 [Jatropha curcas]
18 Hb_000080_070 0.1209772652 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
19 Hb_006267_040 0.1213480311 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
20 Hb_001638_060 0.1213593549 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_005736_120 Hb_005736_120 Hb_163950_090 Hb_163950_090 Hb_005736_120--Hb_163950_090 Hb_004218_060 Hb_004218_060 Hb_005736_120--Hb_004218_060 Hb_001942_060 Hb_001942_060 Hb_005736_120--Hb_001942_060 Hb_000749_140 Hb_000749_140 Hb_005736_120--Hb_000749_140 Hb_001233_050 Hb_001233_050 Hb_005736_120--Hb_001233_050 Hb_003683_170 Hb_003683_170 Hb_005736_120--Hb_003683_170 Hb_163950_090--Hb_001942_060 Hb_002710_040 Hb_002710_040 Hb_163950_090--Hb_002710_040 Hb_163950_090--Hb_000749_140 Hb_163950_090--Hb_004218_060 Hb_145188_010 Hb_145188_010 Hb_163950_090--Hb_145188_010 Hb_004218_060--Hb_145188_010 Hb_004218_060--Hb_002710_040 Hb_004218_060--Hb_001942_060 Hb_007262_010 Hb_007262_010 Hb_004218_060--Hb_007262_010 Hb_001942_060--Hb_001233_050 Hb_001942_060--Hb_000749_140 Hb_101133_030 Hb_101133_030 Hb_001942_060--Hb_101133_030 Hb_002078_280 Hb_002078_280 Hb_001942_060--Hb_002078_280 Hb_000821_030 Hb_000821_030 Hb_001942_060--Hb_000821_030 Hb_004627_050 Hb_004627_050 Hb_001942_060--Hb_004627_050 Hb_000749_140--Hb_101133_030 Hb_001916_110 Hb_001916_110 Hb_000749_140--Hb_001916_110 Hb_000340_280 Hb_000340_280 Hb_000749_140--Hb_000340_280 Hb_000749_140--Hb_001233_050 Hb_000928_100 Hb_000928_100 Hb_000749_140--Hb_000928_100 Hb_002805_200 Hb_002805_200 Hb_001233_050--Hb_002805_200 Hb_000210_030 Hb_000210_030 Hb_001233_050--Hb_000210_030 Hb_001233_050--Hb_101133_030 Hb_001233_050--Hb_002078_280 Hb_001233_050--Hb_000821_030 Hb_000030_070 Hb_000030_070 Hb_003683_170--Hb_000030_070 Hb_001287_020 Hb_001287_020 Hb_003683_170--Hb_001287_020 Hb_005618_030 Hb_005618_030 Hb_003683_170--Hb_005618_030 Hb_001377_080 Hb_001377_080 Hb_003683_170--Hb_001377_080 Hb_006555_020 Hb_006555_020 Hb_003683_170--Hb_006555_020 Hb_001638_060 Hb_001638_060 Hb_003683_170--Hb_001638_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0485381 0.86773 48.9658 6.91053 0.0139478 0.0401683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0951476 0 0.60911 1.88273 29.0589

CAGE analysis