Hb_145188_010

Information

Type -
Description -
Location Contig145188: 824-1240
Sequence    

Annotation

kegg
ID pmum:103322384
description chitinase 5-like
nr
ID XP_012065143.1
description PREDICTED: endochitinase PR4-like [Jatropha curcas]
swissprot
ID O04138
description Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2
trembl
ID A0A067LJ50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05736 PE=4 SV=1
Gene Ontology
ID GO:0004568
description chitinase 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145188_010 0.0 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
2 Hb_004218_060 0.086269467 - - annexin [Manihot esculenta]
3 Hb_007262_010 0.0979805937 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X2 [Jatropha curcas]
4 Hb_163950_090 0.1009055922 - - PREDICTED: traB domain-containing protein isoform X1 [Jatropha curcas]
5 Hb_005736_120 0.10418778 - - PREDICTED: carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic [Gossypium raimondii]
6 Hb_001476_040 0.1049847543 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
7 Hb_000362_080 0.1201008691 - - hypothetical protein EUTSA_v10027329mg, partial [Eutrema salsugineum]
8 Hb_008221_190 0.1227926443 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
9 Hb_001369_460 0.1263694958 - - vacuolar invertase [Manihot esculenta]
10 Hb_006267_040 0.1275355443 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
11 Hb_003750_110 0.128057775 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
12 Hb_001942_060 0.1296317975 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002710_040 0.1346768025 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
14 Hb_000749_140 0.1359647453 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
15 Hb_000163_140 0.136701927 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
16 Hb_124677_010 0.1390825541 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009846_010 0.1399851722 - - PREDICTED: uncharacterized protein LOC105643801 [Jatropha curcas]
18 Hb_001958_030 0.1441871395 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
19 Hb_003387_010 0.1452463058 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
20 Hb_003683_170 0.1465645671 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_145188_010 Hb_145188_010 Hb_004218_060 Hb_004218_060 Hb_145188_010--Hb_004218_060 Hb_007262_010 Hb_007262_010 Hb_145188_010--Hb_007262_010 Hb_163950_090 Hb_163950_090 Hb_145188_010--Hb_163950_090 Hb_005736_120 Hb_005736_120 Hb_145188_010--Hb_005736_120 Hb_001476_040 Hb_001476_040 Hb_145188_010--Hb_001476_040 Hb_000362_080 Hb_000362_080 Hb_145188_010--Hb_000362_080 Hb_004218_060--Hb_005736_120 Hb_002710_040 Hb_002710_040 Hb_004218_060--Hb_002710_040 Hb_001942_060 Hb_001942_060 Hb_004218_060--Hb_001942_060 Hb_004218_060--Hb_007262_010 Hb_004218_060--Hb_163950_090 Hb_003750_110 Hb_003750_110 Hb_007262_010--Hb_003750_110 Hb_000836_620 Hb_000836_620 Hb_007262_010--Hb_000836_620 Hb_007262_010--Hb_000362_080 Hb_007262_010--Hb_005736_120 Hb_163950_090--Hb_005736_120 Hb_163950_090--Hb_001942_060 Hb_163950_090--Hb_002710_040 Hb_000749_140 Hb_000749_140 Hb_163950_090--Hb_000749_140 Hb_005736_120--Hb_001942_060 Hb_005736_120--Hb_000749_140 Hb_001233_050 Hb_001233_050 Hb_005736_120--Hb_001233_050 Hb_003683_170 Hb_003683_170 Hb_005736_120--Hb_003683_170 Hb_001476_040--Hb_000362_080 Hb_009846_010 Hb_009846_010 Hb_001476_040--Hb_009846_010 Hb_001476_040--Hb_007262_010 Hb_001476_040--Hb_004218_060 Hb_000163_140 Hb_000163_140 Hb_001476_040--Hb_000163_140 Hb_000362_080--Hb_009846_010 Hb_009293_030 Hb_009293_030 Hb_000362_080--Hb_009293_030 Hb_001374_050 Hb_001374_050 Hb_000362_080--Hb_001374_050 Hb_002929_030 Hb_002929_030 Hb_000362_080--Hb_002929_030 Hb_000362_080--Hb_000836_620 Hb_009771_010 Hb_009771_010 Hb_000362_080--Hb_009771_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.001 623.705 83.502 0 0.409661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.71045 0.868118 0 54.8864 327.11

CAGE analysis