Hb_000362_080

Information

Type -
Description -
Location Contig362: 85913-91025
Sequence    

Annotation

kegg
ID eus:EUTSA_v10027329mg
description hypothetical protein
nr
ID XP_006414715.1
description hypothetical protein EUTSA_v10027329mg, partial [Eutrema salsugineum]
swissprot
ID -
description -
trembl
ID V4MSB7
description Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10027329mg PE=4 SV=1
Gene Ontology
ID GO:0016020
description sodium calcium exchanger family protein calcium-binding ef hand family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37202: 85989-86356 , PASA_asmbl_37203: 91202-117388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000362_080 0.0 - - hypothetical protein EUTSA_v10027329mg, partial [Eutrema salsugineum]
2 Hb_009846_010 0.0391005468 - - PREDICTED: uncharacterized protein LOC105643801 [Jatropha curcas]
3 Hb_009293_030 0.0852948165 - - PREDICTED: salicylate carboxymethyltransferase [Jatropha curcas]
4 Hb_001374_050 0.0894564929 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
5 Hb_002929_030 0.0925303777 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
6 Hb_000836_620 0.0952091704 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
7 Hb_009771_010 0.0961511382 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
8 Hb_006594_030 0.0992874547 - - -
9 Hb_001153_170 0.0996231449 - - PREDICTED: protein HOTHEAD [Populus euphratica]
10 Hb_089140_130 0.0997519106 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
11 Hb_000136_120 0.1021978637 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
12 Hb_000167_150 0.1029359193 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
13 Hb_003592_040 0.1038051179 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
14 Hb_011316_080 0.1039826498 - - Cucumisin precursor, putative [Ricinus communis]
15 Hb_007262_010 0.1043892348 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X2 [Jatropha curcas]
16 Hb_003750_110 0.1060930557 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
17 Hb_004218_060 0.1066091954 - - annexin [Manihot esculenta]
18 Hb_005460_040 0.1069202756 - - PREDICTED: long chain acyl-CoA synthetase 2 [Jatropha curcas]
19 Hb_001546_140 0.1076991086 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
20 Hb_004553_050 0.1083275059 - - PREDICTED: probable inactive receptor kinase At5g10020 [Jatropha curcas]

Gene co-expression network

sample Hb_000362_080 Hb_000362_080 Hb_009846_010 Hb_009846_010 Hb_000362_080--Hb_009846_010 Hb_009293_030 Hb_009293_030 Hb_000362_080--Hb_009293_030 Hb_001374_050 Hb_001374_050 Hb_000362_080--Hb_001374_050 Hb_002929_030 Hb_002929_030 Hb_000362_080--Hb_002929_030 Hb_000836_620 Hb_000836_620 Hb_000362_080--Hb_000836_620 Hb_009771_010 Hb_009771_010 Hb_000362_080--Hb_009771_010 Hb_009846_010--Hb_009293_030 Hb_009846_010--Hb_009771_010 Hb_089140_130 Hb_089140_130 Hb_009846_010--Hb_089140_130 Hb_009846_010--Hb_002929_030 Hb_001153_170 Hb_001153_170 Hb_009846_010--Hb_001153_170 Hb_003411_070 Hb_003411_070 Hb_009293_030--Hb_003411_070 Hb_031862_190 Hb_031862_190 Hb_009293_030--Hb_031862_190 Hb_001329_060 Hb_001329_060 Hb_009293_030--Hb_001329_060 Hb_001946_070 Hb_001946_070 Hb_009293_030--Hb_001946_070 Hb_004223_120 Hb_004223_120 Hb_009293_030--Hb_004223_120 Hb_004553_050 Hb_004553_050 Hb_001374_050--Hb_004553_050 Hb_005460_040 Hb_005460_040 Hb_001374_050--Hb_005460_040 Hb_003750_110 Hb_003750_110 Hb_001374_050--Hb_003750_110 Hb_001300_190 Hb_001300_190 Hb_001374_050--Hb_001300_190 Hb_001374_050--Hb_000836_620 Hb_001205_140 Hb_001205_140 Hb_001374_050--Hb_001205_140 Hb_002929_030--Hb_009771_010 Hb_001546_140 Hb_001546_140 Hb_002929_030--Hb_001546_140 Hb_002929_030--Hb_001153_170 Hb_000635_240 Hb_000635_240 Hb_002929_030--Hb_000635_240 Hb_007617_030 Hb_007617_030 Hb_002929_030--Hb_007617_030 Hb_002929_030--Hb_089140_130 Hb_000836_620--Hb_003750_110 Hb_000836_620--Hb_002929_030 Hb_001433_210 Hb_001433_210 Hb_000836_620--Hb_001433_210 Hb_000836_620--Hb_000635_240 Hb_000210_210 Hb_000210_210 Hb_000836_620--Hb_000210_210 Hb_000142_050 Hb_000142_050 Hb_000836_620--Hb_000142_050 Hb_009771_010--Hb_001153_170 Hb_009771_010--Hb_089140_130 Hb_009771_010--Hb_001546_140 Hb_011316_080 Hb_011316_080 Hb_009771_010--Hb_011316_080 Hb_009771_010--Hb_007617_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.53619 0.45593 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0784188 1.07872

CAGE analysis