Hb_163950_090

Information

Type -
Description -
Location Contig163950: 86886-88652
Sequence    

Annotation

kegg
ID pop:POPTR_0012s13890g
description POPTRDRAFT_834406; hypothetical protein
nr
ID XP_012090322.1
description PREDICTED: traB domain-containing protein isoform X1 [Jatropha curcas]
swissprot
ID Q99JY4
description TraB domain-containing protein OS=Mus musculus GN=Trabd PE=2 SV=1
trembl
ID A0A067JHR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26159 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15047: 86860-88825
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163950_090 0.0 - - PREDICTED: traB domain-containing protein isoform X1 [Jatropha curcas]
2 Hb_005736_120 0.0794776883 - - PREDICTED: carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic [Gossypium raimondii]
3 Hb_001942_060 0.0886502569 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002710_040 0.0931699118 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
5 Hb_000749_140 0.0974928082 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
6 Hb_004218_060 0.0994155008 - - annexin [Manihot esculenta]
7 Hb_145188_010 0.1009055922 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
8 Hb_092516_010 0.1015437718 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
9 Hb_001233_050 0.1028147291 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
10 Hb_002843_130 0.1045919081 - - PREDICTED: GRF1-interacting factor 2-like isoform X2 [Jatropha curcas]
11 Hb_000084_210 0.1046395575 - - hypothetical protein POPTR_0016s08050g [Populus trichocarpa]
12 Hb_000358_160 0.1055146685 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
13 Hb_000188_070 0.1106354239 - - calcineurin-like phosphoesterase [Manihot esculenta]
14 Hb_003387_010 0.1116067429 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
15 Hb_001958_030 0.1127380447 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
16 Hb_008221_190 0.1149126937 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
17 Hb_003750_110 0.1154932627 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
18 Hb_022167_010 0.1156812894 - - Kinase, putative isoform 2 [Theobroma cacao]
19 Hb_001916_110 0.1157049082 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
20 Hb_000928_100 0.1179322315 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]

Gene co-expression network

sample Hb_163950_090 Hb_163950_090 Hb_005736_120 Hb_005736_120 Hb_163950_090--Hb_005736_120 Hb_001942_060 Hb_001942_060 Hb_163950_090--Hb_001942_060 Hb_002710_040 Hb_002710_040 Hb_163950_090--Hb_002710_040 Hb_000749_140 Hb_000749_140 Hb_163950_090--Hb_000749_140 Hb_004218_060 Hb_004218_060 Hb_163950_090--Hb_004218_060 Hb_145188_010 Hb_145188_010 Hb_163950_090--Hb_145188_010 Hb_005736_120--Hb_004218_060 Hb_005736_120--Hb_001942_060 Hb_005736_120--Hb_000749_140 Hb_001233_050 Hb_001233_050 Hb_005736_120--Hb_001233_050 Hb_003683_170 Hb_003683_170 Hb_005736_120--Hb_003683_170 Hb_001942_060--Hb_001233_050 Hb_001942_060--Hb_000749_140 Hb_101133_030 Hb_101133_030 Hb_001942_060--Hb_101133_030 Hb_002078_280 Hb_002078_280 Hb_001942_060--Hb_002078_280 Hb_000821_030 Hb_000821_030 Hb_001942_060--Hb_000821_030 Hb_004627_050 Hb_004627_050 Hb_001942_060--Hb_004627_050 Hb_001958_030 Hb_001958_030 Hb_002710_040--Hb_001958_030 Hb_003387_010 Hb_003387_010 Hb_002710_040--Hb_003387_010 Hb_000188_070 Hb_000188_070 Hb_002710_040--Hb_000188_070 Hb_002710_040--Hb_004218_060 Hb_002710_040--Hb_001942_060 Hb_000749_140--Hb_101133_030 Hb_001916_110 Hb_001916_110 Hb_000749_140--Hb_001916_110 Hb_000340_280 Hb_000340_280 Hb_000749_140--Hb_000340_280 Hb_000749_140--Hb_001233_050 Hb_000928_100 Hb_000928_100 Hb_000749_140--Hb_000928_100 Hb_004218_060--Hb_145188_010 Hb_004218_060--Hb_001942_060 Hb_007262_010 Hb_007262_010 Hb_004218_060--Hb_007262_010 Hb_145188_010--Hb_007262_010 Hb_145188_010--Hb_005736_120 Hb_001476_040 Hb_001476_040 Hb_145188_010--Hb_001476_040 Hb_000362_080 Hb_000362_080 Hb_145188_010--Hb_000362_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.925743 27.8886 4.47551 0 0.0150992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.274681 0.0926027 0.115005 0.988713 13.6917

CAGE analysis