Hb_033834_020

Information

Type -
Description -
Location Contig33834: 17060-17863
Sequence    

Annotation

kegg
ID rcu:RCOM_0714460
description hypothetical protein
nr
ID XP_002529714.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SUP5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0714460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033834_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000188_070 0.0466382073 - - calcineurin-like phosphoesterase [Manihot esculenta]
3 Hb_000692_060 0.0512170677 - - calcium-dependent protein kinase, putative [Ricinus communis]
4 Hb_007254_010 0.054906783 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
5 Hb_022167_010 0.0720695365 - - Kinase, putative isoform 2 [Theobroma cacao]
6 Hb_000928_100 0.0745296519 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
7 Hb_001958_030 0.075664357 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
8 Hb_002561_040 0.0925942982 - - Photosynthetic electron transfer C [Theobroma cacao]
9 Hb_000236_130 0.094215167 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
10 Hb_000386_010 0.0987454849 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002710_040 0.1008268482 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
12 Hb_046590_010 0.1042609078 - - Cycloeucalenol cycloisomerase, putative [Ricinus communis]
13 Hb_002918_170 0.1046331005 - - PREDICTED: MACPF domain-containing protein NSL1 [Jatropha curcas]
14 Hb_104014_010 0.1051415291 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
15 Hb_003387_010 0.1072661859 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
16 Hb_000084_210 0.1084954438 - - hypothetical protein POPTR_0016s08050g [Populus trichocarpa]
17 Hb_000294_020 0.1113247742 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
18 Hb_003777_090 0.1134905536 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
19 Hb_005116_130 0.1152398155 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
20 Hb_002499_050 0.1154281949 - - receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_033834_020 Hb_033834_020 Hb_000188_070 Hb_000188_070 Hb_033834_020--Hb_000188_070 Hb_000692_060 Hb_000692_060 Hb_033834_020--Hb_000692_060 Hb_007254_010 Hb_007254_010 Hb_033834_020--Hb_007254_010 Hb_022167_010 Hb_022167_010 Hb_033834_020--Hb_022167_010 Hb_000928_100 Hb_000928_100 Hb_033834_020--Hb_000928_100 Hb_001958_030 Hb_001958_030 Hb_033834_020--Hb_001958_030 Hb_000188_070--Hb_000692_060 Hb_000188_070--Hb_001958_030 Hb_000188_070--Hb_007254_010 Hb_001638_190 Hb_001638_190 Hb_000188_070--Hb_001638_190 Hb_000188_070--Hb_000928_100 Hb_000692_060--Hb_007254_010 Hb_000692_060--Hb_001958_030 Hb_000236_130 Hb_000236_130 Hb_000692_060--Hb_000236_130 Hb_000692_060--Hb_022167_010 Hb_007254_010--Hb_000928_100 Hb_007254_010--Hb_022167_010 Hb_003777_090 Hb_003777_090 Hb_007254_010--Hb_003777_090 Hb_022167_010--Hb_000928_100 Hb_022167_010--Hb_000236_130 Hb_179129_010 Hb_179129_010 Hb_022167_010--Hb_179129_010 Hb_004346_050 Hb_004346_050 Hb_022167_010--Hb_004346_050 Hb_000386_010 Hb_000386_010 Hb_000928_100--Hb_000386_010 Hb_000749_140 Hb_000749_140 Hb_000928_100--Hb_000749_140 Hb_000294_020 Hb_000294_020 Hb_000928_100--Hb_000294_020 Hb_001916_110 Hb_001916_110 Hb_000928_100--Hb_001916_110 Hb_002710_040 Hb_002710_040 Hb_001958_030--Hb_002710_040 Hb_001958_030--Hb_001638_190 Hb_003387_010 Hb_003387_010 Hb_001958_030--Hb_003387_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0832698 0.747543 0.107942 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0213333 0.317614

CAGE analysis