Hb_000386_010

Information

Type -
Description -
Location Contig386: 22236-22688
Sequence    

Annotation

kegg
ID rcu:RCOM_1985100
description hypothetical protein
nr
ID XP_002535403.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TAY4
description Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_1985100 PE=4 SV=1
Gene Ontology
ID GO:0000166
description l-type lectin-domain containing receptor kinase -like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000386_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005305_140 0.0565563554 - - unknown [Populus trichocarpa]
3 Hb_000928_100 0.0658896766 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
4 Hb_004109_140 0.0769452655 - - conserved hypothetical protein [Ricinus communis]
5 Hb_022167_010 0.0781005909 - - Kinase, putative isoform 2 [Theobroma cacao]
6 Hb_005888_060 0.0848902976 - - hypothetical protein PRUPE_ppa002432m2g, partial [Prunus persica]
7 Hb_001662_090 0.0871816529 - - PREDICTED: thiosulfate sulfurtransferase 16, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001864_050 0.0874745786 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
9 Hb_005227_030 0.0876128685 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
10 Hb_002561_040 0.0877135841 - - Photosynthetic electron transfer C [Theobroma cacao]
11 Hb_002805_200 0.0885038744 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
12 Hb_001916_110 0.0915689091 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
13 Hb_007254_010 0.0926106047 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
14 Hb_004346_050 0.0929118367 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
15 Hb_078954_030 0.0939888115 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000483_470 0.0963287274 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
17 Hb_179129_010 0.098088324 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
18 Hb_033834_020 0.0987454849 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006775_100 0.1030500576 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
20 Hb_003777_090 0.1034103913 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000386_010 Hb_000386_010 Hb_005305_140 Hb_005305_140 Hb_000386_010--Hb_005305_140 Hb_000928_100 Hb_000928_100 Hb_000386_010--Hb_000928_100 Hb_004109_140 Hb_004109_140 Hb_000386_010--Hb_004109_140 Hb_022167_010 Hb_022167_010 Hb_000386_010--Hb_022167_010 Hb_005888_060 Hb_005888_060 Hb_000386_010--Hb_005888_060 Hb_001662_090 Hb_001662_090 Hb_000386_010--Hb_001662_090 Hb_005305_140--Hb_004109_140 Hb_001864_050 Hb_001864_050 Hb_005305_140--Hb_001864_050 Hb_002025_220 Hb_002025_220 Hb_005305_140--Hb_002025_220 Hb_005305_140--Hb_001662_090 Hb_000834_170 Hb_000834_170 Hb_005305_140--Hb_000834_170 Hb_000928_100--Hb_022167_010 Hb_000749_140 Hb_000749_140 Hb_000928_100--Hb_000749_140 Hb_000294_020 Hb_000294_020 Hb_000928_100--Hb_000294_020 Hb_033834_020 Hb_033834_020 Hb_000928_100--Hb_033834_020 Hb_001916_110 Hb_001916_110 Hb_000928_100--Hb_001916_110 Hb_004109_140--Hb_000834_170 Hb_005227_030 Hb_005227_030 Hb_004109_140--Hb_005227_030 Hb_004109_140--Hb_001864_050 Hb_000483_470 Hb_000483_470 Hb_004109_140--Hb_000483_470 Hb_000236_130 Hb_000236_130 Hb_022167_010--Hb_000236_130 Hb_179129_010 Hb_179129_010 Hb_022167_010--Hb_179129_010 Hb_000692_060 Hb_000692_060 Hb_022167_010--Hb_000692_060 Hb_022167_010--Hb_033834_020 Hb_004346_050 Hb_004346_050 Hb_022167_010--Hb_004346_050 Hb_005888_060--Hb_005227_030 Hb_005888_060--Hb_005305_140 Hb_002561_040 Hb_002561_040 Hb_005888_060--Hb_002561_040 Hb_007254_010 Hb_007254_010 Hb_005888_060--Hb_007254_010 Hb_005511_080 Hb_005511_080 Hb_005888_060--Hb_005511_080 Hb_002805_200 Hb_002805_200 Hb_001662_090--Hb_002805_200 Hb_001662_090--Hb_001864_050 Hb_006775_100 Hb_006775_100 Hb_001662_090--Hb_006775_100 Hb_001662_090--Hb_001916_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.47372 25.0411 2.99835 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.209461 15.9192

CAGE analysis