Hb_001662_090

Information

Type -
Description -
Location Contig1662: 102395-104628
Sequence    

Annotation

kegg
ID rcu:RCOM_0017290
description Senescence-associated protein DIN1, putative
nr
ID XP_012065332.1
description PREDICTED: thiosulfate sulfurtransferase 16, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q38853
description Rhodanese-like domain-containing protein 15, chloroplastic OS=Arabidopsis thaliana GN=STR15 PE=2 SV=1
trembl
ID A0A067L943
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15330: 102562-104577 , PASA_asmbl_15331: 103480-103868 , PASA_asmbl_15332: 102604-103458 , PASA_asmbl_15333: 103869-104059
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001662_090 0.0 - - PREDICTED: thiosulfate sulfurtransferase 16, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_002805_200 0.0758311555 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
3 Hb_001864_050 0.0759547151 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
4 Hb_005305_140 0.0810903004 - - unknown [Populus trichocarpa]
5 Hb_006775_100 0.0846944529 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
6 Hb_001916_110 0.0860013841 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
7 Hb_000386_010 0.0871816529 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000340_280 0.0968328215 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002561_040 0.1002581989 - - Photosynthetic electron transfer C [Theobroma cacao]
10 Hb_078954_030 0.1007856817 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000188_010 0.1032802546 - - PREDICTED: cytochrome P450 94C1-like [Jatropha curcas]
12 Hb_000482_160 0.1037669669 - - hypothetical protein JCGZ_07670 [Jatropha curcas]
13 Hb_000281_120 0.1040098832 - - protein binding protein, putative [Ricinus communis]
14 Hb_000928_100 0.1040227729 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
15 Hb_003921_020 0.1041802813 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
16 Hb_048141_050 0.1071364742 - - hypothetical protein PRUPE_ppa009153mg [Prunus persica]
17 Hb_110266_010 0.1084648474 - - PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]
18 Hb_003651_030 0.1088331218 - - lyase, putative [Ricinus communis]
19 Hb_004109_140 0.1103476563 - - conserved hypothetical protein [Ricinus communis]
20 Hb_180985_010 0.1111222946 - - NDH-dependent cyclic electron flow 1 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001662_090 Hb_001662_090 Hb_002805_200 Hb_002805_200 Hb_001662_090--Hb_002805_200 Hb_001864_050 Hb_001864_050 Hb_001662_090--Hb_001864_050 Hb_005305_140 Hb_005305_140 Hb_001662_090--Hb_005305_140 Hb_006775_100 Hb_006775_100 Hb_001662_090--Hb_006775_100 Hb_001916_110 Hb_001916_110 Hb_001662_090--Hb_001916_110 Hb_000386_010 Hb_000386_010 Hb_001662_090--Hb_000386_010 Hb_000281_120 Hb_000281_120 Hb_002805_200--Hb_000281_120 Hb_003651_030 Hb_003651_030 Hb_002805_200--Hb_003651_030 Hb_000340_280 Hb_000340_280 Hb_002805_200--Hb_000340_280 Hb_002805_200--Hb_001864_050 Hb_078954_030 Hb_078954_030 Hb_002805_200--Hb_078954_030 Hb_001233_050 Hb_001233_050 Hb_002805_200--Hb_001233_050 Hb_001338_120 Hb_001338_120 Hb_001864_050--Hb_001338_120 Hb_001006_150 Hb_001006_150 Hb_001864_050--Hb_001006_150 Hb_000482_160 Hb_000482_160 Hb_001864_050--Hb_000482_160 Hb_001864_050--Hb_000281_120 Hb_001864_050--Hb_005305_140 Hb_004109_140 Hb_004109_140 Hb_005305_140--Hb_004109_140 Hb_005305_140--Hb_000386_010 Hb_002025_220 Hb_002025_220 Hb_005305_140--Hb_002025_220 Hb_000834_170 Hb_000834_170 Hb_005305_140--Hb_000834_170 Hb_006775_100--Hb_001916_110 Hb_011716_140 Hb_011716_140 Hb_006775_100--Hb_011716_140 Hb_002078_280 Hb_002078_280 Hb_006775_100--Hb_002078_280 Hb_006775_100--Hb_002805_200 Hb_003683_170 Hb_003683_170 Hb_006775_100--Hb_003683_170 Hb_000749_140 Hb_000749_140 Hb_001916_110--Hb_000749_140 Hb_001916_110--Hb_002805_200 Hb_001916_110--Hb_000340_280 Hb_000928_100 Hb_000928_100 Hb_001916_110--Hb_000928_100 Hb_101133_030 Hb_101133_030 Hb_001916_110--Hb_101133_030 Hb_000386_010--Hb_000928_100 Hb_000386_010--Hb_004109_140 Hb_022167_010 Hb_022167_010 Hb_000386_010--Hb_022167_010 Hb_005888_060 Hb_005888_060 Hb_000386_010--Hb_005888_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0182673 5.37416 55.59 6.47767 0.0183154 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.500828 0.393952 0 0.0789417 39.7607

CAGE analysis