Hb_000051_150

Information

Type -
Description -
Location Contig51: 308561-309780
Sequence    

Annotation

kegg
ID cic:CICLE_v10003316mg
description hypothetical protein
nr
ID XP_006431374.1
description hypothetical protein CICLE_v10003316mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4UXR9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003316mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46259: 308759-308992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000051_150 0.0 - - hypothetical protein CICLE_v10003316mg [Citrus clementina]
2 Hb_002121_030 0.0718800348 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
3 Hb_000809_220 0.0732034918 - - PREDICTED: 3-ketodihydrosphingosine reductase [Jatropha curcas]
4 Hb_005365_040 0.0735932426 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
5 Hb_104014_010 0.0801566224 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
6 Hb_010422_020 0.0837093146 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]
7 Hb_001369_590 0.0866531924 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
8 Hb_004003_020 0.0881590418 - - unnamed protein product [Coffea canephora]
9 Hb_007681_020 0.0895714507 - - transferase, putative [Ricinus communis]
10 Hb_000152_650 0.0910961539 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
11 Hb_001983_040 0.0959454215 - - PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
12 Hb_054615_010 0.1002514021 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
13 Hb_001913_070 0.1028187561 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
14 Hb_001123_340 0.1101834504 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
15 Hb_089736_010 0.1161340743 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
16 Hb_006620_030 0.1166515969 - - nitrate reductase, putative [Ricinus communis]
17 Hb_000264_160 0.1197219239 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
18 Hb_004308_030 0.1224207126 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
19 Hb_003077_010 0.1228828869 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_002499_050 0.1240632879 - - receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000051_150 Hb_000051_150 Hb_002121_030 Hb_002121_030 Hb_000051_150--Hb_002121_030 Hb_000809_220 Hb_000809_220 Hb_000051_150--Hb_000809_220 Hb_005365_040 Hb_005365_040 Hb_000051_150--Hb_005365_040 Hb_104014_010 Hb_104014_010 Hb_000051_150--Hb_104014_010 Hb_010422_020 Hb_010422_020 Hb_000051_150--Hb_010422_020 Hb_001369_590 Hb_001369_590 Hb_000051_150--Hb_001369_590 Hb_002121_030--Hb_001369_590 Hb_002121_030--Hb_000809_220 Hb_000152_650 Hb_000152_650 Hb_002121_030--Hb_000152_650 Hb_054615_010 Hb_054615_010 Hb_002121_030--Hb_054615_010 Hb_002121_030--Hb_005365_040 Hb_004308_030 Hb_004308_030 Hb_000809_220--Hb_004308_030 Hb_001913_070 Hb_001913_070 Hb_000809_220--Hb_001913_070 Hb_001983_040 Hb_001983_040 Hb_000809_220--Hb_001983_040 Hb_000809_220--Hb_010422_020 Hb_005365_040--Hb_001369_590 Hb_000187_100 Hb_000187_100 Hb_005365_040--Hb_000187_100 Hb_000160_260 Hb_000160_260 Hb_005365_040--Hb_000160_260 Hb_000084_210 Hb_000084_210 Hb_005365_040--Hb_000084_210 Hb_104014_010--Hb_001913_070 Hb_104014_010--Hb_000152_650 Hb_104014_010--Hb_010422_020 Hb_104014_010--Hb_001369_590 Hb_104014_010--Hb_005365_040 Hb_010422_020--Hb_001983_040 Hb_059429_010 Hb_059429_010 Hb_010422_020--Hb_059429_010 Hb_010422_020--Hb_001913_070 Hb_002499_050 Hb_002499_050 Hb_001369_590--Hb_002499_050 Hb_006620_030 Hb_006620_030 Hb_001369_590--Hb_006620_030 Hb_001369_590--Hb_000152_650 Hb_001369_590--Hb_000084_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.141447 1.81556 0.3634 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.365661

CAGE analysis