Hb_005575_010

Information

Type -
Description -
Location Contig5575: 34702-37420
Sequence    

Annotation

kegg
ID pop:POPTR_0004s02560g
description hypothetical protein
nr
ID XP_006383968.1
description hypothetical protein POPTR_0004s02560g [Populus trichocarpa]
swissprot
ID Q8GYA4
description Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=3
trembl
ID U5GE68
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s02560g PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor-like protein kinase at4g00960

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48609: 34752-37414
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005575_010 0.0 - - hypothetical protein POPTR_0004s02560g [Populus trichocarpa]
2 Hb_003453_060 0.0602303818 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
3 Hb_000947_010 0.0826652219 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
4 Hb_003043_130 0.0922154328 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
5 Hb_002025_290 0.0935061162 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
6 Hb_078582_010 0.0935835646 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]
7 Hb_003119_130 0.1041286717 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
8 Hb_001285_020 0.1074639562 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_000574_010 0.1083604867 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
10 Hb_124677_010 0.1150036582 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000866_060 0.119041348 - - putative glycerol-3-phosphate acyltransferase [Vernicia fordii]
12 Hb_000483_430 0.1245705149 - - -
13 Hb_000252_240 0.1285448866 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X2 [Gossypium raimondii]
14 Hb_008143_010 0.1345568236 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
15 Hb_067558_010 0.134781016 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
16 Hb_000239_050 0.1357693987 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
17 Hb_005181_190 0.1362698974 - - PREDICTED: uncharacterized protein LOC105643550 [Jatropha curcas]
18 Hb_001172_150 0.137297214 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
19 Hb_009102_010 0.1374262574 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_001544_060 0.1382338492 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005575_010 Hb_005575_010 Hb_003453_060 Hb_003453_060 Hb_005575_010--Hb_003453_060 Hb_000947_010 Hb_000947_010 Hb_005575_010--Hb_000947_010 Hb_003043_130 Hb_003043_130 Hb_005575_010--Hb_003043_130 Hb_002025_290 Hb_002025_290 Hb_005575_010--Hb_002025_290 Hb_078582_010 Hb_078582_010 Hb_005575_010--Hb_078582_010 Hb_003119_130 Hb_003119_130 Hb_005575_010--Hb_003119_130 Hb_003453_060--Hb_078582_010 Hb_003453_060--Hb_002025_290 Hb_003453_060--Hb_003043_130 Hb_001544_060 Hb_001544_060 Hb_003453_060--Hb_001544_060 Hb_003453_060--Hb_003119_130 Hb_000947_010--Hb_003043_130 Hb_174168_010 Hb_174168_010 Hb_000947_010--Hb_174168_010 Hb_005181_190 Hb_005181_190 Hb_000947_010--Hb_005181_190 Hb_067558_010 Hb_067558_010 Hb_000947_010--Hb_067558_010 Hb_000866_060 Hb_000866_060 Hb_000947_010--Hb_000866_060 Hb_003043_130--Hb_000866_060 Hb_000759_040 Hb_000759_040 Hb_003043_130--Hb_000759_040 Hb_000239_050 Hb_000239_050 Hb_003043_130--Hb_000239_050 Hb_001285_020 Hb_001285_020 Hb_002025_290--Hb_001285_020 Hb_009102_010 Hb_009102_010 Hb_002025_290--Hb_009102_010 Hb_003050_010 Hb_003050_010 Hb_002025_290--Hb_003050_010 Hb_002025_290--Hb_001544_060 Hb_000037_200 Hb_000037_200 Hb_078582_010--Hb_000037_200 Hb_000260_750 Hb_000260_750 Hb_078582_010--Hb_000260_750 Hb_078582_010--Hb_000759_040 Hb_000987_020 Hb_000987_020 Hb_078582_010--Hb_000987_020 Hb_003119_130--Hb_078582_010 Hb_016687_010 Hb_016687_010 Hb_003119_130--Hb_016687_010 Hb_000175_200 Hb_000175_200 Hb_003119_130--Hb_000175_200 Hb_001172_150 Hb_001172_150 Hb_003119_130--Hb_001172_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.27694 13.1054 2.68238 0 0.0251512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.18177 11.1972

CAGE analysis