Hb_005181_190

Information

Type -
Description -
Location Contig5181: 91305-94679
Sequence    

Annotation

kegg
ID rcu:RCOM_1000440
description protein binding protein, putative
nr
ID XP_012084092.1
description PREDICTED: uncharacterized protein LOC105643550 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JVC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19006 PE=4 SV=1
Gene Ontology
ID GO:0031011
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46578: 92291-93310 , PASA_asmbl_46579: 93012-93310 , PASA_asmbl_46580: 93350-94016 , PASA_asmbl_46581: 94159-94427
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005181_190 0.0 - - PREDICTED: uncharacterized protein LOC105643550 [Jatropha curcas]
2 Hb_067558_010 0.0734522574 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
3 Hb_000041_210 0.090561214 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
4 Hb_000947_010 0.0934894724 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
5 Hb_004116_050 0.0941882425 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
6 Hb_000239_050 0.0947947001 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
7 Hb_023732_080 0.1068117654 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
8 Hb_004855_080 0.110288376 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
9 Hb_127263_010 0.1113878447 - - hypothetical protein JCGZ_02828 [Jatropha curcas]
10 Hb_002822_010 0.1168208996 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
11 Hb_001409_080 0.1176766593 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Populus euphratica]
12 Hb_002890_200 0.1202566462 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
13 Hb_003043_130 0.1203617262 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
14 Hb_000866_060 0.120837693 - - putative glycerol-3-phosphate acyltransferase [Vernicia fordii]
15 Hb_000392_260 0.1243373002 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
16 Hb_005535_070 0.1273244148 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012389_010 0.1273867199 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
18 Hb_000008_150 0.1275133261 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
19 Hb_002391_030 0.1281662818 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
20 Hb_000416_090 0.1288026772 - - Aquaporin NIP1.1, putative [Ricinus communis]

Gene co-expression network

sample Hb_005181_190 Hb_005181_190 Hb_067558_010 Hb_067558_010 Hb_005181_190--Hb_067558_010 Hb_000041_210 Hb_000041_210 Hb_005181_190--Hb_000041_210 Hb_000947_010 Hb_000947_010 Hb_005181_190--Hb_000947_010 Hb_004116_050 Hb_004116_050 Hb_005181_190--Hb_004116_050 Hb_000239_050 Hb_000239_050 Hb_005181_190--Hb_000239_050 Hb_023732_080 Hb_023732_080 Hb_005181_190--Hb_023732_080 Hb_067558_010--Hb_000041_210 Hb_067558_010--Hb_004116_050 Hb_067558_010--Hb_000239_050 Hb_067558_010--Hb_000947_010 Hb_001409_080 Hb_001409_080 Hb_067558_010--Hb_001409_080 Hb_012389_010 Hb_012389_010 Hb_000041_210--Hb_012389_010 Hb_000675_010 Hb_000675_010 Hb_000041_210--Hb_000675_010 Hb_131876_010 Hb_131876_010 Hb_000041_210--Hb_131876_010 Hb_000041_210--Hb_000239_050 Hb_000483_430 Hb_000483_430 Hb_000041_210--Hb_000483_430 Hb_003043_130 Hb_003043_130 Hb_000947_010--Hb_003043_130 Hb_005575_010 Hb_005575_010 Hb_000947_010--Hb_005575_010 Hb_174168_010 Hb_174168_010 Hb_000947_010--Hb_174168_010 Hb_000866_060 Hb_000866_060 Hb_000947_010--Hb_000866_060 Hb_001405_040 Hb_001405_040 Hb_004116_050--Hb_001405_040 Hb_000416_090 Hb_000416_090 Hb_004116_050--Hb_000416_090 Hb_001244_070 Hb_001244_070 Hb_004116_050--Hb_001244_070 Hb_004855_080 Hb_004855_080 Hb_004116_050--Hb_004855_080 Hb_127263_010 Hb_127263_010 Hb_000239_050--Hb_127263_010 Hb_000239_050--Hb_000866_060 Hb_000300_110 Hb_000300_110 Hb_000239_050--Hb_000300_110 Hb_007545_070 Hb_007545_070 Hb_000239_050--Hb_007545_070 Hb_000424_130 Hb_000424_130 Hb_000239_050--Hb_000424_130 Hb_023732_080--Hb_067558_010 Hb_005050_030 Hb_005050_030 Hb_023732_080--Hb_005050_030 Hb_023732_080--Hb_000947_010 Hb_023732_080--Hb_004116_050 Hb_000365_440 Hb_000365_440 Hb_023732_080--Hb_000365_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0304026 0.289817 4.23398 2.05517 0.0507717 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0242892 0 1.21175 4.42268

CAGE analysis