Hb_000300_110

Information

Type -
Description -
Location Contig300: 81238-83798
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa018538mg
description hypothetical protein
nr
ID KDP39631.1
description hypothetical protein JCGZ_02651 [Jatropha curcas]
swissprot
ID P24640
description Lipase 3 OS=Moraxella sp. (strain TA144) GN=lip3 PE=1 SV=1
trembl
ID A0A067KTS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02651 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31551: 81306-83431 , PASA_asmbl_31552: 83433-83558
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_110 0.0 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
2 Hb_127263_010 0.0617696237 - - hypothetical protein JCGZ_02828 [Jatropha curcas]
3 Hb_000239_050 0.0677639586 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
4 Hb_029920_010 0.0685410036 - - pepsin A, putative [Ricinus communis]
5 Hb_007545_070 0.0733477929 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
6 Hb_000866_060 0.0781143995 - - putative glycerol-3-phosphate acyltransferase [Vernicia fordii]
7 Hb_000152_350 0.0788232797 - - PREDICTED: enolase [Jatropha curcas]
8 Hb_000424_130 0.0788330889 - - PREDICTED: monoacylglycerol lipase abhd6-B-like [Jatropha curcas]
9 Hb_015044_010 0.0788581766 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
10 Hb_006267_040 0.0795178586 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
11 Hb_000128_040 0.0861679616 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]
12 Hb_001014_240 0.0882639015 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
13 Hb_003371_080 0.0914948287 - - hypothetical protein POPTR_0001s23660g [Populus trichocarpa]
14 Hb_004920_020 0.0961749776 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
15 Hb_137222_010 0.0969001571 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
16 Hb_005535_070 0.0990062206 - - conserved hypothetical protein [Ricinus communis]
17 Hb_174899_010 0.1006787444 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
18 Hb_002391_030 0.102566371 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
19 Hb_000392_260 0.1026135844 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
20 Hb_001266_010 0.1027346146 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]

Gene co-expression network

sample Hb_000300_110 Hb_000300_110 Hb_127263_010 Hb_127263_010 Hb_000300_110--Hb_127263_010 Hb_000239_050 Hb_000239_050 Hb_000300_110--Hb_000239_050 Hb_029920_010 Hb_029920_010 Hb_000300_110--Hb_029920_010 Hb_007545_070 Hb_007545_070 Hb_000300_110--Hb_007545_070 Hb_000866_060 Hb_000866_060 Hb_000300_110--Hb_000866_060 Hb_000152_350 Hb_000152_350 Hb_000300_110--Hb_000152_350 Hb_127263_010--Hb_000239_050 Hb_001409_080 Hb_001409_080 Hb_127263_010--Hb_001409_080 Hb_127263_010--Hb_000866_060 Hb_000424_130 Hb_000424_130 Hb_127263_010--Hb_000424_130 Hb_127263_010--Hb_029920_010 Hb_000239_050--Hb_000866_060 Hb_000041_210 Hb_000041_210 Hb_000239_050--Hb_000041_210 Hb_000239_050--Hb_007545_070 Hb_000239_050--Hb_000424_130 Hb_029920_010--Hb_000152_350 Hb_003702_060 Hb_003702_060 Hb_029920_010--Hb_003702_060 Hb_029920_010--Hb_000424_130 Hb_137222_010 Hb_137222_010 Hb_029920_010--Hb_137222_010 Hb_006618_110 Hb_006618_110 Hb_007545_070--Hb_006618_110 Hb_005892_050 Hb_005892_050 Hb_007545_070--Hb_005892_050 Hb_002835_310 Hb_002835_310 Hb_007545_070--Hb_002835_310 Hb_007545_070--Hb_000424_130 Hb_006267_040 Hb_006267_040 Hb_000866_060--Hb_006267_040 Hb_015044_010 Hb_015044_010 Hb_000866_060--Hb_015044_010 Hb_000866_060--Hb_001409_080 Hb_034235_010 Hb_034235_010 Hb_000152_350--Hb_034235_010 Hb_002078_330 Hb_002078_330 Hb_000152_350--Hb_002078_330 Hb_000152_350--Hb_000424_130 Hb_149644_030 Hb_149644_030 Hb_000152_350--Hb_149644_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0164373 1.61488 32.774 14.4815 0.0265004 0.024775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.210836 0.0473923 0 2.87418 31.52

CAGE analysis