Hb_149644_030

Information

Type -
Description -
Location Contig149644: 28508-32520
Sequence    

Annotation

kegg
ID pop:POPTR_0005s18750g
description hypothetical protein
nr
ID XP_006383540.1
description hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
swissprot
ID Q9FLW0
description Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1
trembl
ID U5GIR9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s18750g PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at5g24010

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12468: 31025-31246 , PASA_asmbl_12469: 31767-31989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_149644_030 0.0 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
2 Hb_002028_020 0.0511995611 - - acyltransferase, putative [Ricinus communis]
3 Hb_034235_010 0.0553363761 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
4 Hb_001488_230 0.0559896544 - - PREDICTED: serine carboxypeptidase-like 25 isoform X2 [Populus euphratica]
5 Hb_001571_100 0.0567198247 - - chlorophyll A-B binding family protein [Populus trichocarpa]
6 Hb_009588_010 0.0631491753 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
7 Hb_000042_280 0.0657059781 - - chlorophyll A/B binding protein, putative [Ricinus communis]
8 Hb_041433_010 0.0664414608 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
9 Hb_002078_330 0.0702402754 - - lipid binding protein, putative [Ricinus communis]
10 Hb_000608_270 0.0722378984 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000418_130 0.0728762524 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
12 Hb_007537_040 0.0736879107 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
13 Hb_000557_070 0.0743779791 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
14 Hb_000163_190 0.0745796479 - - PREDICTED: 21 kDa protein [Populus euphratica]
15 Hb_000152_350 0.0755767121 - - PREDICTED: enolase [Jatropha curcas]
16 Hb_005345_020 0.0776150278 - - Root phototropism protein, putative [Ricinus communis]
17 Hb_002043_020 0.0790000248 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
18 Hb_000333_010 0.0804351012 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
19 Hb_002743_010 0.0830934342 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012098_100 0.0839888575 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_149644_030 Hb_149644_030 Hb_002028_020 Hb_002028_020 Hb_149644_030--Hb_002028_020 Hb_034235_010 Hb_034235_010 Hb_149644_030--Hb_034235_010 Hb_001488_230 Hb_001488_230 Hb_149644_030--Hb_001488_230 Hb_001571_100 Hb_001571_100 Hb_149644_030--Hb_001571_100 Hb_009588_010 Hb_009588_010 Hb_149644_030--Hb_009588_010 Hb_000042_280 Hb_000042_280 Hb_149644_030--Hb_000042_280 Hb_002028_020--Hb_001488_230 Hb_002028_020--Hb_009588_010 Hb_000418_130 Hb_000418_130 Hb_002028_020--Hb_000418_130 Hb_002028_020--Hb_001571_100 Hb_002028_020--Hb_000042_280 Hb_001266_010 Hb_001266_010 Hb_034235_010--Hb_001266_010 Hb_041433_010 Hb_041433_010 Hb_034235_010--Hb_041433_010 Hb_009476_030 Hb_009476_030 Hb_034235_010--Hb_009476_030 Hb_002704_060 Hb_002704_060 Hb_034235_010--Hb_002704_060 Hb_000152_350 Hb_000152_350 Hb_034235_010--Hb_000152_350 Hb_001488_230--Hb_000042_280 Hb_001488_230--Hb_009588_010 Hb_001488_230--Hb_000418_130 Hb_004032_400 Hb_004032_400 Hb_001488_230--Hb_004032_400 Hb_002743_010 Hb_002743_010 Hb_001571_100--Hb_002743_010 Hb_005345_020 Hb_005345_020 Hb_001571_100--Hb_005345_020 Hb_000333_010 Hb_000333_010 Hb_001571_100--Hb_000333_010 Hb_001571_100--Hb_041433_010 Hb_000557_070 Hb_000557_070 Hb_001571_100--Hb_000557_070 Hb_009588_010--Hb_000418_130 Hb_009588_010--Hb_004032_400 Hb_009588_010--Hb_000042_280 Hb_003734_070 Hb_003734_070 Hb_009588_010--Hb_003734_070 Hb_000042_280--Hb_000418_130 Hb_012098_100 Hb_012098_100 Hb_000042_280--Hb_012098_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0257779 0.681645 0.384176 0 0.00633015
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00481587 0.724335

CAGE analysis