Hb_000042_280

Information

Type -
Description -
Location Contig42: 239404-240960
Sequence    

Annotation

kegg
ID rcu:RCOM_1254540
description chlorophyll A/B binding protein, putative
nr
ID XP_002525758.1
description chlorophyll A/B binding protein, putative [Ricinus communis]
swissprot
ID P27489
description Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1
trembl
ID B9SID9
description Chlorophyll A/B binding protein, putative OS=Ricinus communis GN=RCOM_1254540 PE=4 SV=1
Gene Ontology
ID GO:0009522
description chlorophyll a-b binding protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41479: 239394-240804
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_280 0.0 - - chlorophyll A/B binding protein, putative [Ricinus communis]
2 Hb_001488_230 0.0316274956 - - PREDICTED: serine carboxypeptidase-like 25 isoform X2 [Populus euphratica]
3 Hb_000418_130 0.0389631856 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
4 Hb_002028_020 0.046859861 - - acyltransferase, putative [Ricinus communis]
5 Hb_009588_010 0.0498937006 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
6 Hb_012098_100 0.0578016738 - - zinc finger protein, putative [Ricinus communis]
7 Hb_149644_030 0.0657059781 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
8 Hb_001158_130 0.0658211617 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
9 Hb_004032_400 0.0718491373 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
10 Hb_000881_020 0.072532652 - - hypothetical protein MIMGU_mgv1a022110mg, partial [Erythranthe guttata]
11 Hb_003623_080 0.0728130048 - - PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
12 Hb_008225_050 0.0752291797 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
13 Hb_007537_040 0.0778668522 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
14 Hb_002752_020 0.0796676807 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
15 Hb_001277_130 0.0799696367 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
16 Hb_000608_270 0.0800812583 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001735_040 0.0824202997 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
18 Hb_001571_100 0.0829665466 - - chlorophyll A-B binding family protein [Populus trichocarpa]
19 Hb_189208_070 0.0831665344 - - 10-deacetylbaccatin III 10-O-acetyltransferase, putative [Ricinus communis]
20 Hb_146255_030 0.0831977612 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000042_280 Hb_000042_280 Hb_001488_230 Hb_001488_230 Hb_000042_280--Hb_001488_230 Hb_000418_130 Hb_000418_130 Hb_000042_280--Hb_000418_130 Hb_002028_020 Hb_002028_020 Hb_000042_280--Hb_002028_020 Hb_009588_010 Hb_009588_010 Hb_000042_280--Hb_009588_010 Hb_012098_100 Hb_012098_100 Hb_000042_280--Hb_012098_100 Hb_149644_030 Hb_149644_030 Hb_000042_280--Hb_149644_030 Hb_001488_230--Hb_002028_020 Hb_001488_230--Hb_009588_010 Hb_001488_230--Hb_000418_130 Hb_001488_230--Hb_149644_030 Hb_004032_400 Hb_004032_400 Hb_001488_230--Hb_004032_400 Hb_000418_130--Hb_009588_010 Hb_000418_130--Hb_002028_020 Hb_000418_130--Hb_004032_400 Hb_002752_020 Hb_002752_020 Hb_000418_130--Hb_002752_020 Hb_002028_020--Hb_009588_010 Hb_001571_100 Hb_001571_100 Hb_002028_020--Hb_001571_100 Hb_002028_020--Hb_149644_030 Hb_009588_010--Hb_004032_400 Hb_003734_070 Hb_003734_070 Hb_009588_010--Hb_003734_070 Hb_000881_020 Hb_000881_020 Hb_012098_100--Hb_000881_020 Hb_001158_130 Hb_001158_130 Hb_012098_100--Hb_001158_130 Hb_012098_100--Hb_001488_230 Hb_189208_070 Hb_189208_070 Hb_012098_100--Hb_189208_070 Hb_012098_100--Hb_009588_010 Hb_034235_010 Hb_034235_010 Hb_149644_030--Hb_034235_010 Hb_149644_030--Hb_001571_100 Hb_149644_030--Hb_009588_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.284658 65.231 918.417 655.207 0.54409 0.642251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.365194 0.451342 0 2.37743 1156.82

CAGE analysis