Hb_137222_010

Information

Type -
Description -
Location Contig137222: 5190-12997
Sequence    

Annotation

kegg
ID rcu:RCOM_1086240
description Hippocampus abundant transcript 1 protein, putative
nr
ID XP_012074632.1
description PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
swissprot
ID Q8CIA9
description Hippocampus abundant transcript-like protein 1 OS=Mus musculus GN=Hiatl1 PE=2 SV=3
trembl
ID A0A067KHZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10317 PE=4 SV=1
Gene Ontology
ID GO:0016021
description hippocampus abundant transcript-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10272: 5222-8545 , PASA_asmbl_10273: 5222-9149 , PASA_asmbl_10274: 7361-7483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_137222_010 0.0 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
2 Hb_000816_240 0.0855855775 - - PREDICTED: phosphoglucan phosphatase LSF2, chloroplastic [Jatropha curcas]
3 Hb_029920_010 0.0925850695 - - pepsin A, putative [Ricinus communis]
4 Hb_000300_110 0.0969001571 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
5 Hb_000424_130 0.1031503855 - - PREDICTED: monoacylglycerol lipase abhd6-B-like [Jatropha curcas]
6 Hb_000327_260 0.1065936634 - - conserved hypothetical protein [Ricinus communis]
7 Hb_127263_010 0.1072525973 - - hypothetical protein JCGZ_02828 [Jatropha curcas]
8 Hb_000152_350 0.1102486877 - - PREDICTED: enolase [Jatropha curcas]
9 Hb_000950_020 0.1115281589 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
10 Hb_000190_230 0.1143580848 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
11 Hb_010743_010 0.1148649494 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
12 Hb_000832_270 0.1185971821 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001491_070 0.1188285273 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
14 Hb_000239_050 0.1214372873 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
15 Hb_000976_400 0.1224294612 - - synaptotagmin, putative [Ricinus communis]
16 Hb_000866_020 0.1232556392 - - hypothetical protein B456_004G042000 [Gossypium raimondii]
17 Hb_003371_080 0.1250489564 - - hypothetical protein POPTR_0001s23660g [Populus trichocarpa]
18 Hb_005018_010 0.1250937087 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
19 Hb_000369_110 0.1255569903 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_000020_090 0.1259958977 - - hypothetical protein JCGZ_09084 [Jatropha curcas]

Gene co-expression network

sample Hb_137222_010 Hb_137222_010 Hb_000816_240 Hb_000816_240 Hb_137222_010--Hb_000816_240 Hb_029920_010 Hb_029920_010 Hb_137222_010--Hb_029920_010 Hb_000300_110 Hb_000300_110 Hb_137222_010--Hb_000300_110 Hb_000424_130 Hb_000424_130 Hb_137222_010--Hb_000424_130 Hb_000327_260 Hb_000327_260 Hb_137222_010--Hb_000327_260 Hb_127263_010 Hb_127263_010 Hb_137222_010--Hb_127263_010 Hb_005725_240 Hb_005725_240 Hb_000816_240--Hb_005725_240 Hb_004096_210 Hb_004096_210 Hb_000816_240--Hb_004096_210 Hb_000976_400 Hb_000976_400 Hb_000816_240--Hb_000976_400 Hb_069696_020 Hb_069696_020 Hb_000816_240--Hb_069696_020 Hb_006075_030 Hb_006075_030 Hb_000816_240--Hb_006075_030 Hb_029920_010--Hb_000300_110 Hb_000152_350 Hb_000152_350 Hb_029920_010--Hb_000152_350 Hb_003702_060 Hb_003702_060 Hb_029920_010--Hb_003702_060 Hb_029920_010--Hb_000424_130 Hb_029920_010--Hb_127263_010 Hb_000300_110--Hb_127263_010 Hb_000239_050 Hb_000239_050 Hb_000300_110--Hb_000239_050 Hb_007545_070 Hb_007545_070 Hb_000300_110--Hb_007545_070 Hb_000866_060 Hb_000866_060 Hb_000300_110--Hb_000866_060 Hb_000300_110--Hb_000152_350 Hb_000424_130--Hb_000152_350 Hb_002835_310 Hb_002835_310 Hb_000424_130--Hb_002835_310 Hb_000424_130--Hb_007545_070 Hb_000424_130--Hb_000300_110 Hb_000424_130--Hb_127263_010 Hb_000539_040 Hb_000539_040 Hb_000327_260--Hb_000539_040 Hb_009838_070 Hb_009838_070 Hb_000327_260--Hb_009838_070 Hb_009393_130 Hb_009393_130 Hb_000327_260--Hb_009393_130 Hb_000116_220 Hb_000116_220 Hb_000327_260--Hb_000116_220 Hb_000327_260--Hb_004096_210 Hb_000832_270 Hb_000832_270 Hb_000327_260--Hb_000832_270 Hb_127263_010--Hb_000239_050 Hb_001409_080 Hb_001409_080 Hb_127263_010--Hb_001409_080 Hb_127263_010--Hb_000866_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0525905 0.285324 8.48204 5.13628 0.0812597 0.252619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0564371 0.0444026 0 0.929429 9.83464

CAGE analysis