Hb_000116_220

Information

Type -
Description -
Location Contig116: 192034-197275
Sequence    

Annotation

kegg
ID rcu:RCOM_0874470
description hypothetical protein
nr
ID XP_002521722.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S6V3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0874470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04838: 191887-191981
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_220 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000327_260 0.0930865943 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003680_060 0.0937326775 - - hypothetical protein VITISV_022322 [Vitis vinifera]
4 Hb_009838_070 0.0945129743 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
5 Hb_007597_030 0.0958662344 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_005000_110 0.0979792032 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
7 Hb_000020_090 0.1046819697 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
8 Hb_004306_090 0.10574361 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
9 Hb_000539_040 0.1080927631 - - PREDICTED: uncharacterized protein LOC105636110 isoform X1 [Jatropha curcas]
10 Hb_012395_090 0.108978265 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
11 Hb_000544_070 0.1097664158 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
12 Hb_000711_030 0.1110849545 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
13 Hb_001343_030 0.1120050245 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
14 Hb_000962_090 0.112783506 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
15 Hb_004650_050 0.1132596801 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
16 Hb_002495_090 0.113397356 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
17 Hb_000313_250 0.1145970499 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
18 Hb_000049_100 0.1146755059 - - Photosystem II reaction center W protein, putative [Ricinus communis]
19 Hb_000127_100 0.1157606411 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
20 Hb_000808_130 0.1157622147 - - 3-5 exonuclease, putative [Ricinus communis]

Gene co-expression network

sample Hb_000116_220 Hb_000116_220 Hb_000327_260 Hb_000327_260 Hb_000116_220--Hb_000327_260 Hb_003680_060 Hb_003680_060 Hb_000116_220--Hb_003680_060 Hb_009838_070 Hb_009838_070 Hb_000116_220--Hb_009838_070 Hb_007597_030 Hb_007597_030 Hb_000116_220--Hb_007597_030 Hb_005000_110 Hb_005000_110 Hb_000116_220--Hb_005000_110 Hb_000020_090 Hb_000020_090 Hb_000116_220--Hb_000020_090 Hb_000539_040 Hb_000539_040 Hb_000327_260--Hb_000539_040 Hb_000327_260--Hb_009838_070 Hb_009393_130 Hb_009393_130 Hb_000327_260--Hb_009393_130 Hb_004096_210 Hb_004096_210 Hb_000327_260--Hb_004096_210 Hb_000832_270 Hb_000832_270 Hb_000327_260--Hb_000832_270 Hb_003680_060--Hb_009393_130 Hb_003680_060--Hb_009838_070 Hb_004650_050 Hb_004650_050 Hb_003680_060--Hb_004650_050 Hb_091433_050 Hb_091433_050 Hb_003680_060--Hb_091433_050 Hb_000711_030 Hb_000711_030 Hb_003680_060--Hb_000711_030 Hb_009838_070--Hb_004650_050 Hb_009838_070--Hb_009393_130 Hb_009838_070--Hb_000711_030 Hb_009838_070--Hb_004096_210 Hb_002272_210 Hb_002272_210 Hb_007597_030--Hb_002272_210 Hb_007597_030--Hb_005000_110 Hb_001343_030 Hb_001343_030 Hb_007597_030--Hb_001343_030 Hb_000460_040 Hb_000460_040 Hb_007597_030--Hb_000460_040 Hb_003623_080 Hb_003623_080 Hb_007597_030--Hb_003623_080 Hb_005211_080 Hb_005211_080 Hb_007597_030--Hb_005211_080 Hb_005000_110--Hb_001343_030 Hb_000808_130 Hb_000808_130 Hb_005000_110--Hb_000808_130 Hb_000962_090 Hb_000962_090 Hb_005000_110--Hb_000962_090 Hb_023344_090 Hb_023344_090 Hb_005000_110--Hb_023344_090 Hb_001488_250 Hb_001488_250 Hb_005000_110--Hb_001488_250 Hb_002702_010 Hb_002702_010 Hb_000020_090--Hb_002702_010 Hb_004102_060 Hb_004102_060 Hb_000020_090--Hb_004102_060 Hb_012395_090 Hb_012395_090 Hb_000020_090--Hb_012395_090 Hb_000156_110 Hb_000156_110 Hb_000020_090--Hb_000156_110 Hb_004635_120 Hb_004635_120 Hb_000020_090--Hb_004635_120 Hb_002818_150 Hb_002818_150 Hb_000020_090--Hb_002818_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0476906 1.18657 9.10187 4.29321 0.151077 0.189715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136042 0.107056 0.184491 0.186765 9.96955

CAGE analysis