Hb_000832_270

Information

Type -
Description -
Location Contig832: 251922-254156
Sequence    

Annotation

kegg
ID rcu:RCOM_0190480
description hypothetical protein
nr
ID XP_002531980.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T162
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0190480 PE=4 SV=1
Gene Ontology
ID GO:0009507
description cofactor assembly

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59853: 252549-252972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_270 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000327_260 0.096816583 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001231_010 0.1089670442 - - calcium-binding family protein [Populus trichocarpa]
4 Hb_000511_030 0.112793617 - - PREDICTED: uncharacterized protein LOC105636463 [Jatropha curcas]
5 Hb_000163_190 0.1131230787 - - PREDICTED: 21 kDa protein [Populus euphratica]
6 Hb_000116_220 0.1177502283 - - conserved hypothetical protein [Ricinus communis]
7 Hb_137222_010 0.1185971821 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
8 Hb_009838_070 0.1192741846 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
9 Hb_000539_040 0.1218597464 - - PREDICTED: uncharacterized protein LOC105636110 isoform X1 [Jatropha curcas]
10 Hb_019654_180 0.1230704231 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
11 Hb_003632_020 0.1231183787 - - calcium-binding family protein [Populus trichocarpa]
12 Hb_149644_030 0.1271671332 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
13 Hb_000049_100 0.1297729494 - - Photosystem II reaction center W protein, putative [Ricinus communis]
14 Hb_000808_130 0.1304711878 - - 3-5 exonuclease, putative [Ricinus communis]
15 Hb_007597_030 0.1316270498 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_003120_020 0.1318074711 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]
17 Hb_005000_110 0.1324144352 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
18 Hb_000190_230 0.1337448345 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
19 Hb_004102_060 0.1340755953 - - JHL25H03.11 [Jatropha curcas]
20 Hb_010326_020 0.1346308519 - - PREDICTED: thioredoxin-like 4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000832_270 Hb_000832_270 Hb_000327_260 Hb_000327_260 Hb_000832_270--Hb_000327_260 Hb_001231_010 Hb_001231_010 Hb_000832_270--Hb_001231_010 Hb_000511_030 Hb_000511_030 Hb_000832_270--Hb_000511_030 Hb_000163_190 Hb_000163_190 Hb_000832_270--Hb_000163_190 Hb_000116_220 Hb_000116_220 Hb_000832_270--Hb_000116_220 Hb_137222_010 Hb_137222_010 Hb_000832_270--Hb_137222_010 Hb_000539_040 Hb_000539_040 Hb_000327_260--Hb_000539_040 Hb_009838_070 Hb_009838_070 Hb_000327_260--Hb_009838_070 Hb_009393_130 Hb_009393_130 Hb_000327_260--Hb_009393_130 Hb_000327_260--Hb_000116_220 Hb_004096_210 Hb_004096_210 Hb_000327_260--Hb_004096_210 Hb_001231_010--Hb_000327_260 Hb_001231_010--Hb_000539_040 Hb_001728_110 Hb_001728_110 Hb_001231_010--Hb_001728_110 Hb_007479_010 Hb_007479_010 Hb_001231_010--Hb_007479_010 Hb_001231_010--Hb_137222_010 Hb_003371_080 Hb_003371_080 Hb_000511_030--Hb_003371_080 Hb_149644_030 Hb_149644_030 Hb_000511_030--Hb_149644_030 Hb_003623_080 Hb_003623_080 Hb_000511_030--Hb_003623_080 Hb_002028_020 Hb_002028_020 Hb_000511_030--Hb_002028_020 Hb_003632_020 Hb_003632_020 Hb_000511_030--Hb_003632_020 Hb_004338_050 Hb_004338_050 Hb_000511_030--Hb_004338_050 Hb_000915_210 Hb_000915_210 Hb_000163_190--Hb_000915_210 Hb_000163_190--Hb_149644_030 Hb_002743_010 Hb_002743_010 Hb_000163_190--Hb_002743_010 Hb_001571_100 Hb_001571_100 Hb_000163_190--Hb_001571_100 Hb_000731_150 Hb_000731_150 Hb_000163_190--Hb_000731_150 Hb_000557_070 Hb_000557_070 Hb_000163_190--Hb_000557_070 Hb_003680_060 Hb_003680_060 Hb_000116_220--Hb_003680_060 Hb_000116_220--Hb_009838_070 Hb_007597_030 Hb_007597_030 Hb_000116_220--Hb_007597_030 Hb_005000_110 Hb_005000_110 Hb_000116_220--Hb_005000_110 Hb_000020_090 Hb_000020_090 Hb_000116_220--Hb_000020_090 Hb_000816_240 Hb_000816_240 Hb_137222_010--Hb_000816_240 Hb_029920_010 Hb_029920_010 Hb_137222_010--Hb_029920_010 Hb_000300_110 Hb_000300_110 Hb_137222_010--Hb_000300_110 Hb_000424_130 Hb_000424_130 Hb_137222_010--Hb_000424_130 Hb_137222_010--Hb_000327_260 Hb_127263_010 Hb_127263_010 Hb_137222_010--Hb_127263_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0488079 0.167565 3.51065 1.8585 0.0228794 0.243382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0559744 0.0440201 0 0.053216 3.93866

CAGE analysis