Hb_001231_010

Information

Type -
Description -
Location Contig1231: 47333-48022
Sequence    

Annotation

kegg
ID pop:POPTR_0006s06480g
description POPTRDRAFT_560576; calcium-binding family protein
nr
ID XP_002308063.2
description calcium-binding family protein [Populus trichocarpa]
swissprot
ID Q9LX27
description Calmodulin-like protein 4 OS=Arabidopsis thaliana GN=CML4 PE=2 SV=1
trembl
ID B9HA89
description Calcium-binding family protein OS=Populus trichocarpa GN=POPTR_0006s06480g PE=4 SV=2
Gene Ontology
ID GO:0016491
description calmodulin-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001231_010 0.0 - - calcium-binding family protein [Populus trichocarpa]
2 Hb_000832_270 0.1089670442 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000327_260 0.1288278045 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000539_040 0.1376921423 - - PREDICTED: uncharacterized protein LOC105636110 isoform X1 [Jatropha curcas]
5 Hb_001728_110 0.1568305175 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF039-like [Jatropha curcas]
6 Hb_007479_010 0.1595762839 - - Root phototropism protein, putative [Ricinus communis]
7 Hb_137222_010 0.1599185922 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
8 Hb_002495_090 0.162640813 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
9 Hb_003581_230 0.1627338277 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
10 Hb_005488_190 0.1629028622 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
11 Hb_000608_150 0.1644805664 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
12 Hb_000163_190 0.1662704632 - - PREDICTED: 21 kDa protein [Populus euphratica]
13 Hb_126933_020 0.1672921443 - - PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]
14 Hb_002243_020 0.171379652 - - PREDICTED: uncharacterized protein LOC105642097 isoform X1 [Jatropha curcas]
15 Hb_009838_070 0.1717127112 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
16 Hb_000116_220 0.1736274795 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003371_010 0.1762752798 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
18 Hb_000950_020 0.1770441163 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
19 Hb_000190_230 0.1777871773 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
20 Hb_000768_120 0.1781494231 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]

Gene co-expression network

sample Hb_001231_010 Hb_001231_010 Hb_000832_270 Hb_000832_270 Hb_001231_010--Hb_000832_270 Hb_000327_260 Hb_000327_260 Hb_001231_010--Hb_000327_260 Hb_000539_040 Hb_000539_040 Hb_001231_010--Hb_000539_040 Hb_001728_110 Hb_001728_110 Hb_001231_010--Hb_001728_110 Hb_007479_010 Hb_007479_010 Hb_001231_010--Hb_007479_010 Hb_137222_010 Hb_137222_010 Hb_001231_010--Hb_137222_010 Hb_000832_270--Hb_000327_260 Hb_000511_030 Hb_000511_030 Hb_000832_270--Hb_000511_030 Hb_000163_190 Hb_000163_190 Hb_000832_270--Hb_000163_190 Hb_000116_220 Hb_000116_220 Hb_000832_270--Hb_000116_220 Hb_000832_270--Hb_137222_010 Hb_000327_260--Hb_000539_040 Hb_009838_070 Hb_009838_070 Hb_000327_260--Hb_009838_070 Hb_009393_130 Hb_009393_130 Hb_000327_260--Hb_009393_130 Hb_000327_260--Hb_000116_220 Hb_004096_210 Hb_004096_210 Hb_000327_260--Hb_004096_210 Hb_000539_040--Hb_000116_220 Hb_000539_040--Hb_009838_070 Hb_000711_030 Hb_000711_030 Hb_000539_040--Hb_000711_030 Hb_000539_040--Hb_000832_270 Hb_000539_040--Hb_137222_010 Hb_001421_040 Hb_001421_040 Hb_001728_110--Hb_001421_040 Hb_003177_050 Hb_003177_050 Hb_001728_110--Hb_003177_050 Hb_005488_190 Hb_005488_190 Hb_001728_110--Hb_005488_190 Hb_000373_200 Hb_000373_200 Hb_001728_110--Hb_000373_200 Hb_000679_080 Hb_000679_080 Hb_001728_110--Hb_000679_080 Hb_000768_120 Hb_000768_120 Hb_007479_010--Hb_000768_120 Hb_002495_090 Hb_002495_090 Hb_007479_010--Hb_002495_090 Hb_000134_040 Hb_000134_040 Hb_007479_010--Hb_000134_040 Hb_004855_070 Hb_004855_070 Hb_007479_010--Hb_004855_070 Hb_006681_020 Hb_006681_020 Hb_007479_010--Hb_006681_020 Hb_000932_110 Hb_000932_110 Hb_007479_010--Hb_000932_110 Hb_000816_240 Hb_000816_240 Hb_137222_010--Hb_000816_240 Hb_029920_010 Hb_029920_010 Hb_137222_010--Hb_029920_010 Hb_000300_110 Hb_000300_110 Hb_137222_010--Hb_000300_110 Hb_000424_130 Hb_000424_130 Hb_137222_010--Hb_000424_130 Hb_137222_010--Hb_000327_260 Hb_127263_010 Hb_127263_010 Hb_137222_010--Hb_127263_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.16257 5.71621 112.342 51.1334 0.907617 15.2949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.412731 0.0648912 0.115597 3.48737 108.893

CAGE analysis