Hb_003177_050

Information

Type -
Description -
Location Contig3177: 52877-54878
Sequence    

Annotation

kegg
ID pop:POPTR_0005s25880g
description POPTRDRAFT_715415; hypothetical protein
nr
ID XP_011028989.1
description PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Populus euphratica]
swissprot
ID Q8GW29
description Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 OS=Arabidopsis thaliana GN=LOG7 PE=1 SV=2
trembl
ID U5GKD4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s02560g PE=4 SV=1
Gene Ontology
ID GO:0016787
description cytokinin riboside 5 -monophosphate phosphoribohydrolase log1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33468: 52784-54756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003177_050 0.0 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Populus euphratica]
2 Hb_000866_020 0.1109903937 - - hypothetical protein B456_004G042000 [Gossypium raimondii]
3 Hb_142663_020 0.1186506182 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
4 Hb_000618_110 0.1202497438 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
5 Hb_009393_130 0.1213980892 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
6 Hb_003680_060 0.126453009 - - hypothetical protein VITISV_022322 [Vitis vinifera]
7 Hb_000948_120 0.1265353352 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
8 Hb_004096_210 0.1272698193 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
9 Hb_001227_140 0.1292548298 - - PREDICTED: protein ROS1 [Jatropha curcas]
10 Hb_005488_190 0.1298130956 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
11 Hb_002811_250 0.1318127704 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
12 Hb_000679_080 0.133358222 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
13 Hb_003416_020 0.1342274567 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
14 Hb_009838_070 0.1346470237 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
15 Hb_003141_060 0.1347551138 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
16 Hb_172426_060 0.1348074179 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
17 Hb_003915_020 0.1348195602 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
18 Hb_000327_260 0.1380566656 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003605_060 0.139297956 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
20 Hb_000352_280 0.1394371179 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003177_050 Hb_003177_050 Hb_000866_020 Hb_000866_020 Hb_003177_050--Hb_000866_020 Hb_142663_020 Hb_142663_020 Hb_003177_050--Hb_142663_020 Hb_000618_110 Hb_000618_110 Hb_003177_050--Hb_000618_110 Hb_009393_130 Hb_009393_130 Hb_003177_050--Hb_009393_130 Hb_003680_060 Hb_003680_060 Hb_003177_050--Hb_003680_060 Hb_000948_120 Hb_000948_120 Hb_003177_050--Hb_000948_120 Hb_004096_210 Hb_004096_210 Hb_000866_020--Hb_004096_210 Hb_000866_020--Hb_000618_110 Hb_000327_260 Hb_000327_260 Hb_000866_020--Hb_000327_260 Hb_000352_280 Hb_000352_280 Hb_000866_020--Hb_000352_280 Hb_074197_030 Hb_074197_030 Hb_000866_020--Hb_074197_030 Hb_000834_060 Hb_000834_060 Hb_142663_020--Hb_000834_060 Hb_000684_200 Hb_000684_200 Hb_142663_020--Hb_000684_200 Hb_002811_250 Hb_002811_250 Hb_142663_020--Hb_002811_250 Hb_010557_010 Hb_010557_010 Hb_142663_020--Hb_010557_010 Hb_005181_120 Hb_005181_120 Hb_142663_020--Hb_005181_120 Hb_000618_110--Hb_004096_210 Hb_000847_030 Hb_000847_030 Hb_000618_110--Hb_000847_030 Hb_000140_460 Hb_000140_460 Hb_000618_110--Hb_000140_460 Hb_006970_030 Hb_006970_030 Hb_000618_110--Hb_006970_030 Hb_000618_110--Hb_009393_130 Hb_009393_130--Hb_003680_060 Hb_007803_040 Hb_007803_040 Hb_009393_130--Hb_007803_040 Hb_003605_060 Hb_003605_060 Hb_009393_130--Hb_003605_060 Hb_009838_070 Hb_009838_070 Hb_009393_130--Hb_009838_070 Hb_009393_130--Hb_010557_010 Hb_009393_130--Hb_002811_250 Hb_003680_060--Hb_009838_070 Hb_000116_220 Hb_000116_220 Hb_003680_060--Hb_000116_220 Hb_004650_050 Hb_004650_050 Hb_003680_060--Hb_004650_050 Hb_091433_050 Hb_091433_050 Hb_003680_060--Hb_091433_050 Hb_000711_030 Hb_000711_030 Hb_003680_060--Hb_000711_030 Hb_002636_030 Hb_002636_030 Hb_000948_120--Hb_002636_030 Hb_121089_010 Hb_121089_010 Hb_000948_120--Hb_121089_010 Hb_001227_140 Hb_001227_140 Hb_000948_120--Hb_001227_140 Hb_001159_070 Hb_001159_070 Hb_000948_120--Hb_001159_070 Hb_000948_120--Hb_003680_060 Hb_000948_120--Hb_000140_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.212994 0.49783 3.49448 1.74113 0.0265161 0.13371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0650065 0.255582 0 0.620104 4.32157

CAGE analysis