Hb_001227_140

Information

Type -
Description -
Location Contig1227: 208363-219787
Sequence    

Annotation

kegg
ID tcc:TCM_022433
description Repressor of gene silencing 1 isoform 1
nr
ID XP_012066501.1
description PREDICTED: protein ROS1 [Jatropha curcas]
swissprot
ID Q9SJQ6
description Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2
trembl
ID A0A067LE41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23695 PE=4 SV=1
Gene Ontology
ID GO:0006281
description protein ros1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06918: 208588-209941 , PASA_asmbl_06919: 209942-210367 , PASA_asmbl_06920: 210374-219800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001227_140 0.0 - - PREDICTED: protein ROS1 [Jatropha curcas]
2 Hb_003915_020 0.0708288209 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
3 Hb_003141_060 0.096404927 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
4 Hb_000948_120 0.103955852 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
5 Hb_000940_030 0.1058762374 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
6 Hb_001365_030 0.1144713137 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
7 Hb_003055_070 0.1205541744 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
8 Hb_003416_020 0.1208074673 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
9 Hb_003119_130 0.1226119994 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
10 Hb_121089_010 0.1227015455 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
11 Hb_000679_080 0.1245699744 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
12 Hb_000684_200 0.1266393957 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
13 Hb_002890_160 0.1267835703 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
14 Hb_000175_200 0.1291540406 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003177_050 0.1292548298 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Populus euphratica]
16 Hb_006277_080 0.1294074944 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
17 Hb_000922_160 0.1294371976 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
18 Hb_002811_250 0.1314542195 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
19 Hb_000212_270 0.1328752175 - - calreticulin, putative [Ricinus communis]
20 Hb_016687_010 0.1353370344 - - PREDICTED: uncharacterized protein LOC105637401 [Jatropha curcas]

Gene co-expression network

sample Hb_001227_140 Hb_001227_140 Hb_003915_020 Hb_003915_020 Hb_001227_140--Hb_003915_020 Hb_003141_060 Hb_003141_060 Hb_001227_140--Hb_003141_060 Hb_000948_120 Hb_000948_120 Hb_001227_140--Hb_000948_120 Hb_000940_030 Hb_000940_030 Hb_001227_140--Hb_000940_030 Hb_001365_030 Hb_001365_030 Hb_001227_140--Hb_001365_030 Hb_003055_070 Hb_003055_070 Hb_001227_140--Hb_003055_070 Hb_004102_080 Hb_004102_080 Hb_003915_020--Hb_004102_080 Hb_003915_020--Hb_003141_060 Hb_121089_010 Hb_121089_010 Hb_003915_020--Hb_121089_010 Hb_003915_020--Hb_000940_030 Hb_003915_020--Hb_000948_120 Hb_000968_010 Hb_000968_010 Hb_003141_060--Hb_000968_010 Hb_000002_300 Hb_000002_300 Hb_003141_060--Hb_000002_300 Hb_016687_010 Hb_016687_010 Hb_003141_060--Hb_016687_010 Hb_003141_060--Hb_000948_120 Hb_002636_030 Hb_002636_030 Hb_000948_120--Hb_002636_030 Hb_000948_120--Hb_121089_010 Hb_001159_070 Hb_001159_070 Hb_000948_120--Hb_001159_070 Hb_003680_060 Hb_003680_060 Hb_000948_120--Hb_003680_060 Hb_000140_460 Hb_000140_460 Hb_000948_120--Hb_000140_460 Hb_010868_040 Hb_010868_040 Hb_000940_030--Hb_010868_040 Hb_000310_060 Hb_000310_060 Hb_000940_030--Hb_000310_060 Hb_000270_280 Hb_000270_280 Hb_000940_030--Hb_000270_280 Hb_000940_030--Hb_003055_070 Hb_000996_080 Hb_000996_080 Hb_000940_030--Hb_000996_080 Hb_000940_030--Hb_001365_030 Hb_010632_020 Hb_010632_020 Hb_001365_030--Hb_010632_020 Hb_007765_130 Hb_007765_130 Hb_001365_030--Hb_007765_130 Hb_000679_080 Hb_000679_080 Hb_001365_030--Hb_000679_080 Hb_002044_160 Hb_002044_160 Hb_001365_030--Hb_002044_160 Hb_003053_070 Hb_003053_070 Hb_001365_030--Hb_003053_070 Hb_003055_070--Hb_007765_130 Hb_000446_040 Hb_000446_040 Hb_003055_070--Hb_000446_040 Hb_000005_100 Hb_000005_100 Hb_003055_070--Hb_000005_100 Hb_000093_140 Hb_000093_140 Hb_003055_070--Hb_000093_140 Hb_004223_270 Hb_004223_270 Hb_003055_070--Hb_004223_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.945604 4.38776 17.9425 6.17826 0.341031 0.407409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.681051 0.614823 0.527199 4.30365 18.7864

CAGE analysis