Hb_001365_030

Information

Type -
Description -
Location Contig1365: 69457-74046
Sequence    

Annotation

kegg
ID cit:102609547
description uncharacterized LOC102609547
nr
ID XP_006471576.1
description PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID W4ZND7
description Uncharacterized protein OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID GO:0009507
description neutral alpha-glucosidase c-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10049: 18075-74100
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001365_030 0.0 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
2 Hb_010632_020 0.0854949057 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
3 Hb_007765_130 0.0966303958 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
4 Hb_000940_030 0.100856938 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
5 Hb_000679_080 0.1053880323 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
6 Hb_002044_160 0.1061069608 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
7 Hb_003053_070 0.1092650894 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
8 Hb_002374_450 0.1096573719 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
9 Hb_007904_060 0.1140097719 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
10 Hb_001365_020 0.1141635199 - - hypothetical protein PRUPE_ppa000927mg [Prunus persica]
11 Hb_001227_140 0.1144713137 - - PREDICTED: protein ROS1 [Jatropha curcas]
12 Hb_001360_030 0.1147752441 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
13 Hb_172426_060 0.1153346316 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
14 Hb_032631_030 0.1158873185 - - phosphatidic acid phosphatase, putative [Ricinus communis]
15 Hb_003055_070 0.1164448697 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
16 Hb_003416_020 0.1169351711 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
17 Hb_001001_120 0.1175093888 - - protein phosphatase, putative [Ricinus communis]
18 Hb_000516_080 0.1177436826 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
19 Hb_005276_070 0.1182517548 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
20 Hb_000996_080 0.1190291711 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]

Gene co-expression network

sample Hb_001365_030 Hb_001365_030 Hb_010632_020 Hb_010632_020 Hb_001365_030--Hb_010632_020 Hb_007765_130 Hb_007765_130 Hb_001365_030--Hb_007765_130 Hb_000940_030 Hb_000940_030 Hb_001365_030--Hb_000940_030 Hb_000679_080 Hb_000679_080 Hb_001365_030--Hb_000679_080 Hb_002044_160 Hb_002044_160 Hb_001365_030--Hb_002044_160 Hb_003053_070 Hb_003053_070 Hb_001365_030--Hb_003053_070 Hb_001360_030 Hb_001360_030 Hb_010632_020--Hb_001360_030 Hb_010632_020--Hb_000940_030 Hb_002374_450 Hb_002374_450 Hb_010632_020--Hb_002374_450 Hb_010632_020--Hb_003053_070 Hb_005276_070 Hb_005276_070 Hb_010632_020--Hb_005276_070 Hb_000042_050 Hb_000042_050 Hb_007765_130--Hb_000042_050 Hb_003055_070 Hb_003055_070 Hb_007765_130--Hb_003055_070 Hb_000005_100 Hb_000005_100 Hb_007765_130--Hb_000005_100 Hb_007765_130--Hb_000679_080 Hb_000093_140 Hb_000093_140 Hb_007765_130--Hb_000093_140 Hb_010868_040 Hb_010868_040 Hb_000940_030--Hb_010868_040 Hb_000310_060 Hb_000310_060 Hb_000940_030--Hb_000310_060 Hb_000270_280 Hb_000270_280 Hb_000940_030--Hb_000270_280 Hb_000940_030--Hb_003055_070 Hb_000996_080 Hb_000996_080 Hb_000940_030--Hb_000996_080 Hb_005181_120 Hb_005181_120 Hb_000679_080--Hb_005181_120 Hb_002811_250 Hb_002811_250 Hb_000679_080--Hb_002811_250 Hb_010098_040 Hb_010098_040 Hb_000679_080--Hb_010098_040 Hb_003416_020 Hb_003416_020 Hb_000679_080--Hb_003416_020 Hb_000516_080 Hb_000516_080 Hb_000679_080--Hb_000516_080 Hb_007982_040 Hb_007982_040 Hb_000679_080--Hb_007982_040 Hb_158092_100 Hb_158092_100 Hb_002044_160--Hb_158092_100 Hb_000454_100 Hb_000454_100 Hb_002044_160--Hb_000454_100 Hb_002005_040 Hb_002005_040 Hb_002044_160--Hb_002005_040 Hb_000579_040 Hb_000579_040 Hb_002044_160--Hb_000579_040 Hb_002044_160--Hb_002374_450 Hb_004055_160 Hb_004055_160 Hb_002044_160--Hb_004055_160 Hb_004837_100 Hb_004837_100 Hb_003053_070--Hb_004837_100 Hb_001365_020 Hb_001365_020 Hb_003053_070--Hb_001365_020 Hb_000684_200 Hb_000684_200 Hb_003053_070--Hb_000684_200 Hb_004162_270 Hb_004162_270 Hb_003053_070--Hb_004162_270 Hb_003053_070--Hb_000516_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.82865 8.1005 43.2887 20.2564 3.08961 4.15009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.33097 2.13934 1.919 12.7003 45.4803

CAGE analysis