Hb_000454_100

Information

Type -
Description -
Location Contig454: 95564-98722
Sequence    

Annotation

kegg
ID rcu:RCOM_1450950
description aldo-keto reductase, putative (EC:1.1.1.200)
nr
ID XP_002513006.1
description aldo-keto reductase, putative [Ricinus communis]
swissprot
ID P28475
description NADP-dependent D-sorbitol-6-phosphate dehydrogenase OS=Malus domestica GN=S6PDH PE=2 SV=1
trembl
ID B9RG54
description Aldo-keto reductase, putative OS=Ricinus communis GN=RCOM_1450950 PE=4 SV=1
Gene Ontology
ID GO:0005829
description nadp-dependent d-sorbitol-6-phosphate dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43344: 95626-98726 , PASA_asmbl_43345: 95596-96479
cDNA
(Sanger)
(ID:Location)		 002_P08.ab1: 95596-96479 , 026_B09.ab1: 95626-98243 , 027_B03.ab1: 95626-98364 , 049_D20.ab1: 95626-98243

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000454_100 0.0 - - aldo-keto reductase, putative [Ricinus communis]
2 Hb_002044_160 0.0810582032 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
3 Hb_000696_190 0.0972489086 - - PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 1 [Jatropha curcas]
4 Hb_004710_020 0.102777051 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
5 Hb_158092_100 0.1057201516 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
6 Hb_002005_040 0.1109479477 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_000496_130 0.1129735956 - - PREDICTED: fructokinase-1 [Jatropha curcas]
8 Hb_010632_020 0.1151809966 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
9 Hb_004055_160 0.1204777824 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
10 Hb_001365_030 0.1219060915 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
11 Hb_025194_090 0.1233839293 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
12 Hb_000414_080 0.1234166835 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
13 Hb_000265_070 0.1237681681 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
14 Hb_000579_040 0.125481222 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
15 Hb_070624_010 0.1256216621 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
16 Hb_001143_100 0.1265324696 - - PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
17 Hb_009687_020 0.1270220833 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
18 Hb_124379_010 0.1283034547 - - PREDICTED: notchless protein homolog [Citrus sinensis]
19 Hb_005116_100 0.1289060618 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
20 Hb_001001_120 0.1289348254 - - protein phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000454_100 Hb_000454_100 Hb_002044_160 Hb_002044_160 Hb_000454_100--Hb_002044_160 Hb_000696_190 Hb_000696_190 Hb_000454_100--Hb_000696_190 Hb_004710_020 Hb_004710_020 Hb_000454_100--Hb_004710_020 Hb_158092_100 Hb_158092_100 Hb_000454_100--Hb_158092_100 Hb_002005_040 Hb_002005_040 Hb_000454_100--Hb_002005_040 Hb_000496_130 Hb_000496_130 Hb_000454_100--Hb_000496_130 Hb_002044_160--Hb_158092_100 Hb_002044_160--Hb_002005_040 Hb_000579_040 Hb_000579_040 Hb_002044_160--Hb_000579_040 Hb_002374_450 Hb_002374_450 Hb_002044_160--Hb_002374_450 Hb_004055_160 Hb_004055_160 Hb_002044_160--Hb_004055_160 Hb_007943_150 Hb_007943_150 Hb_000696_190--Hb_007943_150 Hb_000696_190--Hb_004710_020 Hb_000270_710 Hb_000270_710 Hb_000696_190--Hb_000270_710 Hb_000265_070 Hb_000265_070 Hb_000696_190--Hb_000265_070 Hb_002902_140 Hb_002902_140 Hb_000696_190--Hb_002902_140 Hb_004710_020--Hb_000496_130 Hb_000085_070 Hb_000085_070 Hb_004710_020--Hb_000085_070 Hb_002828_060 Hb_002828_060 Hb_004710_020--Hb_002828_060 Hb_006006_060 Hb_006006_060 Hb_004710_020--Hb_006006_060 Hb_001348_090 Hb_001348_090 Hb_004710_020--Hb_001348_090 Hb_009687_020 Hb_009687_020 Hb_158092_100--Hb_009687_020 Hb_006420_010 Hb_006420_010 Hb_158092_100--Hb_006420_010 Hb_007904_060 Hb_007904_060 Hb_158092_100--Hb_007904_060 Hb_000473_050 Hb_000473_050 Hb_158092_100--Hb_000473_050 Hb_158092_100--Hb_004055_160 Hb_002005_040--Hb_004055_160 Hb_002005_040--Hb_001348_090 Hb_005116_100 Hb_005116_100 Hb_002005_040--Hb_005116_100 Hb_000684_430 Hb_000684_430 Hb_002005_040--Hb_000684_430 Hb_001269_500 Hb_001269_500 Hb_002005_040--Hb_001269_500 Hb_003355_010 Hb_003355_010 Hb_000496_130--Hb_003355_010 Hb_001143_100 Hb_001143_100 Hb_000496_130--Hb_001143_100 Hb_000496_130--Hb_007943_150 Hb_025194_090 Hb_025194_090 Hb_000496_130--Hb_025194_090 Hb_000510_190 Hb_000510_190 Hb_000496_130--Hb_000510_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2799 14.4892 87.6574 53.0315 19.2072 12.3254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.724 7.84752 6.65741 41.2194 105.768

CAGE analysis