Hb_002902_140

Information

Type -
Description -
Location Contig2902: 140148-144330
Sequence    

Annotation

kegg
ID rcu:RCOM_0396560
description prolyl 4-hydroxylase alpha subunit, putative (EC:1.14.11.2)
nr
ID XP_012079365.1
description PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
swissprot
ID Q8VZJ7
description Probable prolyl 4-hydroxylase 9 OS=Arabidopsis thaliana GN=P4H9 PE=2 SV=1
trembl
ID A0A067KIE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12506 PE=4 SV=1
Gene Ontology
ID GO:0016705
description probable prolyl 4-hydroxylase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30433: 140753-143849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002902_140 0.0 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
2 Hb_014497_060 0.1061739128 - - phosphofructokinase, putative [Ricinus communis]
3 Hb_019654_020 0.1078369168 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
4 Hb_002249_080 0.1099450029 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
5 Hb_000007_060 0.1099830371 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 1-like isoform X1 [Jatropha curcas]
6 Hb_106890_010 0.1126422061 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
7 Hb_003355_010 0.1134850577 - - Heat shock 70 kDa protein, putative [Ricinus communis]
8 Hb_002392_020 0.1135008015 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
9 Hb_000496_130 0.1148039606 - - PREDICTED: fructokinase-1 [Jatropha curcas]
10 Hb_007741_120 0.1151175814 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
11 Hb_003490_060 0.1168293442 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
12 Hb_009078_030 0.1186614563 - - hypothetical protein PRUPE_ppa016992mg, partial [Prunus persica]
13 Hb_187247_020 0.1199006058 - - PREDICTED: uncharacterized protein LOC101220469 [Cucumis sativus]
14 Hb_007943_150 0.1202000945 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
15 Hb_004710_020 0.1203562475 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
16 Hb_000585_110 0.1220373982 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
17 Hb_097495_010 0.1223855047 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
18 Hb_003680_220 0.1232823543 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
19 Hb_007441_310 0.1247021126 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
20 Hb_003602_020 0.1258297576 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_002902_140 Hb_002902_140 Hb_014497_060 Hb_014497_060 Hb_002902_140--Hb_014497_060 Hb_019654_020 Hb_019654_020 Hb_002902_140--Hb_019654_020 Hb_002249_080 Hb_002249_080 Hb_002902_140--Hb_002249_080 Hb_000007_060 Hb_000007_060 Hb_002902_140--Hb_000007_060 Hb_106890_010 Hb_106890_010 Hb_002902_140--Hb_106890_010 Hb_003355_010 Hb_003355_010 Hb_002902_140--Hb_003355_010 Hb_000256_110 Hb_000256_110 Hb_014497_060--Hb_000256_110 Hb_002026_070 Hb_002026_070 Hb_014497_060--Hb_002026_070 Hb_002232_490 Hb_002232_490 Hb_014497_060--Hb_002232_490 Hb_002631_130 Hb_002631_130 Hb_014497_060--Hb_002631_130 Hb_000922_260 Hb_000922_260 Hb_014497_060--Hb_000922_260 Hb_000367_180 Hb_000367_180 Hb_019654_020--Hb_000367_180 Hb_019654_020--Hb_000007_060 Hb_015884_020 Hb_015884_020 Hb_019654_020--Hb_015884_020 Hb_000979_130 Hb_000979_130 Hb_019654_020--Hb_000979_130 Hb_000585_110 Hb_000585_110 Hb_019654_020--Hb_000585_110 Hb_003058_100 Hb_003058_100 Hb_019654_020--Hb_003058_100 Hb_002249_080--Hb_000585_110 Hb_006916_050 Hb_006916_050 Hb_002249_080--Hb_006916_050 Hb_000007_090 Hb_000007_090 Hb_002249_080--Hb_000007_090 Hb_002249_080--Hb_015884_020 Hb_002828_060 Hb_002828_060 Hb_002249_080--Hb_002828_060 Hb_000510_190 Hb_000510_190 Hb_002249_080--Hb_000510_190 Hb_000007_060--Hb_000367_180 Hb_000007_060--Hb_015884_020 Hb_000260_510 Hb_000260_510 Hb_000007_060--Hb_000260_510 Hb_000007_060--Hb_106890_010 Hb_000007_060--Hb_000979_130 Hb_106890_010--Hb_003355_010 Hb_030736_040 Hb_030736_040 Hb_106890_010--Hb_030736_040 Hb_003490_060 Hb_003490_060 Hb_106890_010--Hb_003490_060 Hb_005571_010 Hb_005571_010 Hb_106890_010--Hb_005571_010 Hb_007741_120 Hb_007741_120 Hb_106890_010--Hb_007741_120 Hb_106890_010--Hb_019654_020 Hb_003355_010--Hb_030736_040 Hb_003355_010--Hb_005571_010 Hb_000496_130 Hb_000496_130 Hb_003355_010--Hb_000496_130 Hb_003355_010--Hb_007741_120 Hb_003355_010--Hb_003490_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19423 0.872159 4.09805 4.46164 0.918778 1.16352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.28345 1.28515 0.648173 4.32028 5.87137

CAGE analysis