Hb_000007_060

Information

Type -
Description -
Location Contig7: 81946-83403
Sequence    

Annotation

kegg
ID tcc:TCM_011383
description 6-phosphogluconate dehydrogenase family protein isoform 1
nr
ID XP_012080493.1
description PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q94KU1
description 6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Spinacia oleracea GN=pgdC PE=1 SV=1
trembl
ID A0A067K5C3
description 6-phosphogluconate dehydrogenase, decarboxylating OS=Jatropha curcas GN=JCGZ_11807 PE=3 SV=1
Gene Ontology
ID GO:0005777
description 6-phosphogluconate decarboxylating 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54727: 80794-81497
cDNA
(Sanger)
(ID:Location)		 024_M24.ab1: 80794-81495

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_060 0.0 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 1-like isoform X1 [Jatropha curcas]
2 Hb_019654_020 0.062831016 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
3 Hb_000367_180 0.0641182508 - - Heparanase-2, putative [Ricinus communis]
4 Hb_015884_020 0.0775892858 - - PREDICTED: protein PIR [Jatropha curcas]
5 Hb_000260_510 0.0889254151 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
6 Hb_106890_010 0.0919027414 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
7 Hb_000979_130 0.0924924556 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
8 Hb_002687_200 0.0954792413 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005694_060 0.0963223767 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
10 Hb_007933_040 0.09709351 - - PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
11 Hb_002249_080 0.1002778238 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
12 Hb_001226_130 0.101351681 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
13 Hb_003058_100 0.1038438707 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
14 Hb_003490_060 0.1050095025 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
15 Hb_003680_220 0.1055633431 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
16 Hb_007741_120 0.1061354388 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
17 Hb_002902_140 0.1099830371 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
18 Hb_002392_020 0.1100804047 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
19 Hb_002686_200 0.110370705 - - glucosidase II beta subunit, putative [Ricinus communis]
20 Hb_000585_110 0.1112796932 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]

Gene co-expression network

sample Hb_000007_060 Hb_000007_060 Hb_019654_020 Hb_019654_020 Hb_000007_060--Hb_019654_020 Hb_000367_180 Hb_000367_180 Hb_000007_060--Hb_000367_180 Hb_015884_020 Hb_015884_020 Hb_000007_060--Hb_015884_020 Hb_000260_510 Hb_000260_510 Hb_000007_060--Hb_000260_510 Hb_106890_010 Hb_106890_010 Hb_000007_060--Hb_106890_010 Hb_000979_130 Hb_000979_130 Hb_000007_060--Hb_000979_130 Hb_019654_020--Hb_000367_180 Hb_019654_020--Hb_015884_020 Hb_019654_020--Hb_000979_130 Hb_000585_110 Hb_000585_110 Hb_019654_020--Hb_000585_110 Hb_003058_100 Hb_003058_100 Hb_019654_020--Hb_003058_100 Hb_000367_180--Hb_000979_130 Hb_065968_010 Hb_065968_010 Hb_000367_180--Hb_065968_010 Hb_000367_180--Hb_015884_020 Hb_000367_180--Hb_000260_510 Hb_005694_060 Hb_005694_060 Hb_015884_020--Hb_005694_060 Hb_001117_110 Hb_001117_110 Hb_015884_020--Hb_001117_110 Hb_006970_020 Hb_006970_020 Hb_015884_020--Hb_006970_020 Hb_015884_020--Hb_000979_130 Hb_002687_200 Hb_002687_200 Hb_015884_020--Hb_002687_200 Hb_000395_110 Hb_000395_110 Hb_000260_510--Hb_000395_110 Hb_000260_510--Hb_000979_130 Hb_010672_020 Hb_010672_020 Hb_000260_510--Hb_010672_020 Hb_001507_120 Hb_001507_120 Hb_000260_510--Hb_001507_120 Hb_003355_010 Hb_003355_010 Hb_106890_010--Hb_003355_010 Hb_030736_040 Hb_030736_040 Hb_106890_010--Hb_030736_040 Hb_003490_060 Hb_003490_060 Hb_106890_010--Hb_003490_060 Hb_005571_010 Hb_005571_010 Hb_106890_010--Hb_005571_010 Hb_007741_120 Hb_007741_120 Hb_106890_010--Hb_007741_120 Hb_106890_010--Hb_019654_020 Hb_000979_130--Hb_005694_060 Hb_000979_130--Hb_000395_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.805909 0.723416 1.94779 2.73127 0.796622 0.475435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.722337 0.487076 0.76003 2.02227 2.59451

CAGE analysis