Hb_002249_080

Information

Type -
Description -
Location Contig2249: 74898-93260
Sequence    

Annotation

kegg
ID rcu:RCOM_1503670
description lysosomal alpha-mannosidase, putative (EC:3.2.1.24)
nr
ID XP_002511094.1
description lysosomal alpha-mannosidase, putative [Ricinus communis]
swissprot
ID C0HJB3
description Alpha-mannosidase OS=Canavalia ensiformis PE=1 SV=1
trembl
ID B9RA69
description Alpha-mannosidase OS=Ricinus communis GN=RCOM_1503670 PE=3 SV=1
Gene Ontology
ID GO:0004559
description lysosomal alpha-mannosidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23398: 75157-75607 , PASA_asmbl_23399: 84369-93221
cDNA
(Sanger)
(ID:Location)		 001_C16r.ab1: 94128-94915

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002249_080 0.0 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
2 Hb_000585_110 0.0649091451 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
3 Hb_006916_050 0.0754069966 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
4 Hb_000007_090 0.0758872324 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
5 Hb_015884_020 0.0789389098 - - PREDICTED: protein PIR [Jatropha curcas]
6 Hb_002828_060 0.0795488026 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
7 Hb_000510_190 0.0806538969 - - glutathione reductase [Hevea brasiliensis]
8 Hb_005694_060 0.080707961 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
9 Hb_002687_200 0.0814471298 - - conserved hypothetical protein [Ricinus communis]
10 Hb_068079_010 0.0823403701 - - -
11 Hb_005571_010 0.0826192456 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
12 Hb_106890_010 0.0829568386 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
13 Hb_055690_010 0.0838060387 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
14 Hb_003355_010 0.0851710178 - - Heat shock 70 kDa protein, putative [Ricinus communis]
15 Hb_000414_080 0.0867756535 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
16 Hb_019654_020 0.0875750506 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
17 Hb_001117_110 0.0880939319 - - PREDICTED: dynamin-2A [Jatropha curcas]
18 Hb_002150_020 0.0907091596 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_003490_060 0.091713001 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
20 Hb_032631_070 0.091893133 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002249_080 Hb_002249_080 Hb_000585_110 Hb_000585_110 Hb_002249_080--Hb_000585_110 Hb_006916_050 Hb_006916_050 Hb_002249_080--Hb_006916_050 Hb_000007_090 Hb_000007_090 Hb_002249_080--Hb_000007_090 Hb_015884_020 Hb_015884_020 Hb_002249_080--Hb_015884_020 Hb_002828_060 Hb_002828_060 Hb_002249_080--Hb_002828_060 Hb_000510_190 Hb_000510_190 Hb_002249_080--Hb_000510_190 Hb_055690_010 Hb_055690_010 Hb_000585_110--Hb_055690_010 Hb_000585_110--Hb_000007_090 Hb_007441_310 Hb_007441_310 Hb_000585_110--Hb_007441_310 Hb_019654_020 Hb_019654_020 Hb_000585_110--Hb_019654_020 Hb_000417_390 Hb_000417_390 Hb_000585_110--Hb_000417_390 Hb_068079_010 Hb_068079_010 Hb_006916_050--Hb_068079_010 Hb_000376_210 Hb_000376_210 Hb_006916_050--Hb_000376_210 Hb_000617_250 Hb_000617_250 Hb_006916_050--Hb_000617_250 Hb_006916_050--Hb_002828_060 Hb_004705_160 Hb_004705_160 Hb_006916_050--Hb_004705_160 Hb_002687_200 Hb_002687_200 Hb_000007_090--Hb_002687_200 Hb_003680_220 Hb_003680_220 Hb_000007_090--Hb_003680_220 Hb_008725_270 Hb_008725_270 Hb_000007_090--Hb_008725_270 Hb_000007_090--Hb_019654_020 Hb_005694_060 Hb_005694_060 Hb_015884_020--Hb_005694_060 Hb_001117_110 Hb_001117_110 Hb_015884_020--Hb_001117_110 Hb_015884_020--Hb_019654_020 Hb_006970_020 Hb_006970_020 Hb_015884_020--Hb_006970_020 Hb_000979_130 Hb_000979_130 Hb_015884_020--Hb_000979_130 Hb_015884_020--Hb_002687_200 Hb_003490_060 Hb_003490_060 Hb_002828_060--Hb_003490_060 Hb_002828_060--Hb_068079_010 Hb_000482_050 Hb_000482_050 Hb_002828_060--Hb_000482_050 Hb_002828_060--Hb_000510_190 Hb_001140_180 Hb_001140_180 Hb_002828_060--Hb_001140_180 Hb_000487_370 Hb_000487_370 Hb_000510_190--Hb_000487_370 Hb_000414_080 Hb_000414_080 Hb_000510_190--Hb_000414_080 Hb_009296_020 Hb_009296_020 Hb_000510_190--Hb_009296_020 Hb_000510_190--Hb_003490_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.43078 4.52215 9.4323 11.4564 2.79127 2.67608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.74526 3.02114 2.18058 6.46621 13.9687

CAGE analysis