Hb_000617_250

Information

Type -
Description -
Location Contig617: 187204-191104
Sequence    

Annotation

kegg
ID rcu:RCOM_1433290
description ATP-dependent Clp protease proteolytic subunit, putative (EC:3.4.21.92)
nr
ID XP_012089008.1
description PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
swissprot
ID Q8L770
description ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1
trembl
ID A0A067JKX3
description ATP-dependent Clp protease proteolytic subunit OS=Jatropha curcas GN=JCGZ_23311 PE=3 SV=1
Gene Ontology
ID GO:0005739
description protease complex subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51294: 187126-191027
cDNA
(Sanger)
(ID:Location)		 026_M24.ab1: 188246-191027 , 036_L05.ab1: 187816-190958

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_250 0.0 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
2 Hb_007012_030 0.072320648 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
3 Hb_025194_050 0.0743932032 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
4 Hb_001421_090 0.0809841934 - - hypothetical protein RCOM_1278080 [Ricinus communis]
5 Hb_000376_210 0.0829394944 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
6 Hb_000482_050 0.0838437288 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
7 Hb_068804_090 0.0839230143 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
8 Hb_004629_030 0.0849540438 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_001439_070 0.0853771154 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
10 Hb_013749_050 0.0855247393 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
11 Hb_006916_050 0.085678821 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
12 Hb_002828_060 0.0895612489 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
13 Hb_002973_110 0.0897198777 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_001677_220 0.0934491735 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
15 Hb_000748_090 0.0938038927 - - glucose inhibited division protein A, putative [Ricinus communis]
16 Hb_000032_500 0.0951042492 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
17 Hb_003142_010 0.0965829312 transcription factor TF Family: SET PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]
18 Hb_001511_090 0.0987284461 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
19 Hb_000510_190 0.1009299444 - - glutathione reductase [Hevea brasiliensis]
20 Hb_013459_020 0.1014244599 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]

Gene co-expression network

sample Hb_000617_250 Hb_000617_250 Hb_007012_030 Hb_007012_030 Hb_000617_250--Hb_007012_030 Hb_025194_050 Hb_025194_050 Hb_000617_250--Hb_025194_050 Hb_001421_090 Hb_001421_090 Hb_000617_250--Hb_001421_090 Hb_000376_210 Hb_000376_210 Hb_000617_250--Hb_000376_210 Hb_000482_050 Hb_000482_050 Hb_000617_250--Hb_000482_050 Hb_068804_090 Hb_068804_090 Hb_000617_250--Hb_068804_090 Hb_000748_090 Hb_000748_090 Hb_007012_030--Hb_000748_090 Hb_002600_070 Hb_002600_070 Hb_007012_030--Hb_002600_070 Hb_007012_030--Hb_068804_090 Hb_007012_030--Hb_000482_050 Hb_004324_360 Hb_004324_360 Hb_007012_030--Hb_004324_360 Hb_001105_040 Hb_001105_040 Hb_025194_050--Hb_001105_040 Hb_000270_480 Hb_000270_480 Hb_025194_050--Hb_000270_480 Hb_001832_200 Hb_001832_200 Hb_025194_050--Hb_001832_200 Hb_025194_050--Hb_007012_030 Hb_068079_010 Hb_068079_010 Hb_025194_050--Hb_068079_010 Hb_024184_010 Hb_024184_010 Hb_001421_090--Hb_024184_010 Hb_001439_070 Hb_001439_070 Hb_001421_090--Hb_001439_070 Hb_000300_510 Hb_000300_510 Hb_001421_090--Hb_000300_510 Hb_000538_280 Hb_000538_280 Hb_001421_090--Hb_000538_280 Hb_005914_040 Hb_005914_040 Hb_001421_090--Hb_005914_040 Hb_006916_050 Hb_006916_050 Hb_000376_210--Hb_006916_050 Hb_021079_020 Hb_021079_020 Hb_000376_210--Hb_021079_020 Hb_004629_030 Hb_004629_030 Hb_000376_210--Hb_004629_030 Hb_000762_110 Hb_000762_110 Hb_000376_210--Hb_000762_110 Hb_000376_210--Hb_068804_090 Hb_002828_060 Hb_002828_060 Hb_000482_050--Hb_002828_060 Hb_000482_050--Hb_004629_030 Hb_001396_020 Hb_001396_020 Hb_000482_050--Hb_001396_020 Hb_000482_050--Hb_002600_070 Hb_000482_050--Hb_000748_090 Hb_068804_090--Hb_000748_090 Hb_013749_050 Hb_013749_050 Hb_068804_090--Hb_013749_050 Hb_000243_120 Hb_000243_120 Hb_068804_090--Hb_000243_120 Hb_030736_040 Hb_030736_040 Hb_068804_090--Hb_030736_040 Hb_068804_090--Hb_004629_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.64631 20.545 25.0819 20.2225 9.10598 9.29211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5246 9.13967 4.9797 17.3558 45.4292

CAGE analysis