Hb_001396_020

Information

Type -
Description -
Location Contig1396: 10855-16672
Sequence    

Annotation

kegg
ID rcu:RCOM_1078990
description glucose-6-phosphate 1-dehydrogenase, putative (EC:1.1.1.49)
nr
ID AIE47267.1
description glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
swissprot
ID Q9FY99
description Glucose-6-phosphate 1-dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=At5g13110 PE=2 SV=2
trembl
ID A0A068LJJ9
description Glucose-6-phosphate 1-dehydrogenase OS=Hevea brasiliensis GN=G6PDH-2 PE=2 SV=1
Gene Ontology
ID GO:0004345
description glucose-6-phosphate 1- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10734: 10900-16550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_020 0.0 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
2 Hb_001279_020 0.0614650117 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
3 Hb_000300_560 0.0646205771 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
4 Hb_000482_050 0.0720421768 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
5 Hb_002600_070 0.0778663784 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
6 Hb_000529_130 0.0781457084 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
7 Hb_012779_080 0.0791710524 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
8 Hb_000748_090 0.0796083408 - - glucose inhibited division protein A, putative [Ricinus communis]
9 Hb_000320_190 0.0810353261 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
10 Hb_000562_070 0.0846467647 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
11 Hb_021596_020 0.0857093141 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
12 Hb_000878_160 0.0864796956 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
13 Hb_005305_130 0.0868601828 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
14 Hb_029552_020 0.088617628 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000771_170 0.0893861525 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_001623_490 0.090868389 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
17 Hb_003462_060 0.091827004 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
18 Hb_004994_350 0.0923480509 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
19 Hb_000453_030 0.0924853791 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
20 Hb_001663_130 0.0941456376 - - acyl-CoA thioesterase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001396_020 Hb_001396_020 Hb_001279_020 Hb_001279_020 Hb_001396_020--Hb_001279_020 Hb_000300_560 Hb_000300_560 Hb_001396_020--Hb_000300_560 Hb_000482_050 Hb_000482_050 Hb_001396_020--Hb_000482_050 Hb_002600_070 Hb_002600_070 Hb_001396_020--Hb_002600_070 Hb_000529_130 Hb_000529_130 Hb_001396_020--Hb_000529_130 Hb_012779_080 Hb_012779_080 Hb_001396_020--Hb_012779_080 Hb_000562_070 Hb_000562_070 Hb_001279_020--Hb_000562_070 Hb_029552_020 Hb_029552_020 Hb_001279_020--Hb_029552_020 Hb_001053_080 Hb_001053_080 Hb_001279_020--Hb_001053_080 Hb_001279_090 Hb_001279_090 Hb_001279_020--Hb_001279_090 Hb_001279_020--Hb_000529_130 Hb_011188_010 Hb_011188_010 Hb_000300_560--Hb_011188_010 Hb_000300_560--Hb_000482_050 Hb_004577_010 Hb_004577_010 Hb_000300_560--Hb_004577_010 Hb_021596_020 Hb_021596_020 Hb_000300_560--Hb_021596_020 Hb_000300_560--Hb_001279_020 Hb_002828_060 Hb_002828_060 Hb_000482_050--Hb_002828_060 Hb_004629_030 Hb_004629_030 Hb_000482_050--Hb_004629_030 Hb_000482_050--Hb_002600_070 Hb_007012_030 Hb_007012_030 Hb_000482_050--Hb_007012_030 Hb_000748_090 Hb_000748_090 Hb_000482_050--Hb_000748_090 Hb_002600_070--Hb_000748_090 Hb_002600_070--Hb_007012_030 Hb_000771_170 Hb_000771_170 Hb_002600_070--Hb_000771_170 Hb_001277_340 Hb_001277_340 Hb_002600_070--Hb_001277_340 Hb_009158_060 Hb_009158_060 Hb_002600_070--Hb_009158_060 Hb_004994_350 Hb_004994_350 Hb_000529_130--Hb_004994_350 Hb_000529_130--Hb_000562_070 Hb_000529_130--Hb_029552_020 Hb_003849_160 Hb_003849_160 Hb_000529_130--Hb_003849_160 Hb_005665_090 Hb_005665_090 Hb_012779_080--Hb_005665_090 Hb_000320_190 Hb_000320_190 Hb_012779_080--Hb_000320_190 Hb_001623_490 Hb_001623_490 Hb_012779_080--Hb_001623_490 Hb_002915_010 Hb_002915_010 Hb_012779_080--Hb_002915_010 Hb_010620_050 Hb_010620_050 Hb_012779_080--Hb_010620_050 Hb_009288_040 Hb_009288_040 Hb_012779_080--Hb_009288_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.31458 10.2511 20.6074 10.6381 4.85894 6.3586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.1008 2.77046 3.80149 7.16365 17.4846

CAGE analysis