Hb_004577_010

Information

Type -
Description -
Location Contig4577: 29711-33086
Sequence    

Annotation

kegg
ID pmum:103336789
description transmembrane protein 45A
nr
ID XP_008238108.1
description PREDICTED: transmembrane protein 45A [Prunus mume]
swissprot
ID Q6P0S3
description Transmembrane protein 45B OS=Danio rerio GN=tmem45b PE=2 SV=1
trembl
ID B9S1J1
description Transmembrane protein 45a, putative OS=Ricinus communis GN=RCOM_0865410 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 45b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43491: 28900-33062 , PASA_asmbl_43492: 30247-30572
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004577_010 0.0 - - PREDICTED: transmembrane protein 45A [Prunus mume]
2 Hb_000300_560 0.0779216331 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
3 Hb_011188_010 0.0786749507 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
4 Hb_004162_220 0.0897991234 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
5 Hb_001663_130 0.0909965747 - - acyl-CoA thioesterase, putative [Ricinus communis]
6 Hb_002686_410 0.0948552519 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
7 Hb_003058_140 0.0963736993 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000260_160 0.0978622197 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
9 Hb_001247_210 0.0993095221 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000477_070 0.1029331619 - - histone h2a, putative [Ricinus communis]
11 Hb_000172_360 0.1060124999 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
12 Hb_000453_230 0.1061044932 - - PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_004718_060 0.1071492782 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
14 Hb_000445_210 0.1120680091 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
15 Hb_000482_050 0.1122409153 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
16 Hb_023091_010 0.1126737198 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
17 Hb_001998_210 0.1136380718 - - unnamed protein product [Coffea canephora]
18 Hb_009178_010 0.114148831 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
19 Hb_000979_140 0.1143157521 - - kinase family protein [Populus trichocarpa]
20 Hb_002259_220 0.1147588565 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]

Gene co-expression network

sample Hb_004577_010 Hb_004577_010 Hb_000300_560 Hb_000300_560 Hb_004577_010--Hb_000300_560 Hb_011188_010 Hb_011188_010 Hb_004577_010--Hb_011188_010 Hb_004162_220 Hb_004162_220 Hb_004577_010--Hb_004162_220 Hb_001663_130 Hb_001663_130 Hb_004577_010--Hb_001663_130 Hb_002686_410 Hb_002686_410 Hb_004577_010--Hb_002686_410 Hb_003058_140 Hb_003058_140 Hb_004577_010--Hb_003058_140 Hb_001396_020 Hb_001396_020 Hb_000300_560--Hb_001396_020 Hb_000300_560--Hb_011188_010 Hb_000482_050 Hb_000482_050 Hb_000300_560--Hb_000482_050 Hb_021596_020 Hb_021596_020 Hb_000300_560--Hb_021596_020 Hb_001279_020 Hb_001279_020 Hb_000300_560--Hb_001279_020 Hb_009078_020 Hb_009078_020 Hb_011188_010--Hb_009078_020 Hb_001059_060 Hb_001059_060 Hb_011188_010--Hb_001059_060 Hb_000477_070 Hb_000477_070 Hb_011188_010--Hb_000477_070 Hb_000594_060 Hb_000594_060 Hb_011188_010--Hb_000594_060 Hb_004162_220--Hb_003058_140 Hb_000172_360 Hb_000172_360 Hb_004162_220--Hb_000172_360 Hb_000976_110 Hb_000976_110 Hb_004162_220--Hb_000976_110 Hb_006816_010 Hb_006816_010 Hb_004162_220--Hb_006816_010 Hb_000109_260 Hb_000109_260 Hb_004162_220--Hb_000109_260 Hb_001663_130--Hb_000300_560 Hb_003894_060 Hb_003894_060 Hb_001663_130--Hb_003894_060 Hb_001160_110 Hb_001160_110 Hb_001663_130--Hb_001160_110 Hb_007594_080 Hb_007594_080 Hb_001663_130--Hb_007594_080 Hb_002447_050 Hb_002447_050 Hb_001663_130--Hb_002447_050 Hb_001663_130--Hb_011188_010 Hb_009178_010 Hb_009178_010 Hb_002686_410--Hb_009178_010 Hb_005885_030 Hb_005885_030 Hb_002686_410--Hb_005885_030 Hb_000270_700 Hb_000270_700 Hb_002686_410--Hb_000270_700 Hb_000034_110 Hb_000034_110 Hb_002686_410--Hb_000034_110 Hb_009158_060 Hb_009158_060 Hb_002686_410--Hb_009158_060 Hb_000030_140 Hb_000030_140 Hb_002686_410--Hb_000030_140 Hb_003058_140--Hb_000172_360 Hb_005305_100 Hb_005305_100 Hb_003058_140--Hb_005305_100 Hb_001159_060 Hb_001159_060 Hb_003058_140--Hb_001159_060 Hb_003058_140--Hb_009158_060 Hb_000137_010 Hb_000137_010 Hb_003058_140--Hb_000137_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.07795 15.2766 25.7533 12.0926 4.54335 3.8397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.62876 3.83161 1.8824 11.2192 16.3667

CAGE analysis