Hb_009078_020

Information

Type -
Description -
Location Contig9078: 20283-28380
Sequence    

Annotation

kegg
ID pop:POPTR_0016s03470g
description POPTRDRAFT_734755; CDPK-related kinase 1 family protein
nr
ID XP_011000411.1
description PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
swissprot
ID O80673
description CDPK-related kinase 1 OS=Arabidopsis thaliana GN=CRK1 PE=1 SV=1
trembl
ID A0A067K6N5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20019 PE=4 SV=1
Gene Ontology
ID GO:0004672
description cdpk-related kinase 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62080: 19991-26073
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009078_020 0.0 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
2 Hb_001059_060 0.0546750227 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
3 Hb_011188_010 0.0549801953 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
4 Hb_001998_210 0.0792907936 - - unnamed protein product [Coffea canephora]
5 Hb_002809_160 0.0802738777 - - PREDICTED: protein FAM63A [Jatropha curcas]
6 Hb_001408_020 0.08044304 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
7 Hb_000853_330 0.0846885055 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
8 Hb_001414_010 0.0855257228 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
9 Hb_000227_320 0.0872741831 - - unnamed protein product [Vitis vinifera]
10 Hb_029552_020 0.0890111806 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002259_220 0.0903518623 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
12 Hb_010407_030 0.092369563 - - PREDICTED: casein kinase I-like [Jatropha curcas]
13 Hb_004052_110 0.0950408298 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
14 Hb_001001_090 0.0956470719 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
15 Hb_002849_050 0.0987658881 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
16 Hb_003849_160 0.0994127882 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
17 Hb_000197_180 0.1009759363 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
18 Hb_000477_070 0.1009760457 - - histone h2a, putative [Ricinus communis]
19 Hb_001484_090 0.1023605256 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
20 Hb_000649_330 0.1024329165 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]

Gene co-expression network

sample Hb_009078_020 Hb_009078_020 Hb_001059_060 Hb_001059_060 Hb_009078_020--Hb_001059_060 Hb_011188_010 Hb_011188_010 Hb_009078_020--Hb_011188_010 Hb_001998_210 Hb_001998_210 Hb_009078_020--Hb_001998_210 Hb_002809_160 Hb_002809_160 Hb_009078_020--Hb_002809_160 Hb_001408_020 Hb_001408_020 Hb_009078_020--Hb_001408_020 Hb_000853_330 Hb_000853_330 Hb_009078_020--Hb_000853_330 Hb_001059_060--Hb_000853_330 Hb_004052_110 Hb_004052_110 Hb_001059_060--Hb_004052_110 Hb_001059_060--Hb_011188_010 Hb_001059_060--Hb_001998_210 Hb_001439_070 Hb_001439_070 Hb_001059_060--Hb_001439_070 Hb_000300_560 Hb_000300_560 Hb_011188_010--Hb_000300_560 Hb_000477_070 Hb_000477_070 Hb_011188_010--Hb_000477_070 Hb_000594_060 Hb_000594_060 Hb_011188_010--Hb_000594_060 Hb_004577_010 Hb_004577_010 Hb_011188_010--Hb_004577_010 Hb_001414_010 Hb_001414_010 Hb_001998_210--Hb_001414_010 Hb_001998_210--Hb_001439_070 Hb_001998_210--Hb_004052_110 Hb_000300_030 Hb_000300_030 Hb_001998_210--Hb_000300_030 Hb_143629_020 Hb_143629_020 Hb_002809_160--Hb_143629_020 Hb_002809_160--Hb_001414_010 Hb_029552_020 Hb_029552_020 Hb_002809_160--Hb_029552_020 Hb_005305_130 Hb_005305_130 Hb_002809_160--Hb_005305_130 Hb_000172_360 Hb_000172_360 Hb_002809_160--Hb_000172_360 Hb_000732_230 Hb_000732_230 Hb_001408_020--Hb_000732_230 Hb_001408_020--Hb_002809_160 Hb_007290_070 Hb_007290_070 Hb_001408_020--Hb_007290_070 Hb_000227_320 Hb_000227_320 Hb_001408_020--Hb_000227_320 Hb_187005_010 Hb_187005_010 Hb_001408_020--Hb_187005_010 Hb_000197_180 Hb_000197_180 Hb_000853_330--Hb_000197_180 Hb_010407_030 Hb_010407_030 Hb_000853_330--Hb_010407_030 Hb_006949_060 Hb_006949_060 Hb_000853_330--Hb_006949_060 Hb_000375_060 Hb_000375_060 Hb_000853_330--Hb_000375_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68913 8.56321 10.2723 9.23364 2.57021 2.70929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.5765 1.1734 1.0186 6.0659 9.29548

CAGE analysis