Hb_000732_230

Information

Type -
Description -
Location Contig732: 238554-244381
Sequence    

Annotation

kegg
ID rcu:RCOM_1095990
description TRANSPORT INHIBITOR RESPONSE 1 protein, putative
nr
ID XP_012091485.1
description PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q570C0
description Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2
trembl
ID A0A067JMY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21350 PE=4 SV=1
Gene Ontology
ID GO:0000822
description protein transport inhibitor response 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56131: 238557-244329 , PASA_asmbl_56132: 241679-242113 , PASA_asmbl_56133: 243434-244921 , PASA_asmbl_56134: 243434-244921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000732_230 0.0 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
2 Hb_000950_040 0.0656814258 - - cation-transporting atpase plant, putative [Ricinus communis]
3 Hb_115513_040 0.0834254814 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001408_020 0.0878955843 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
5 Hb_001951_240 0.0929975928 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
6 Hb_000227_320 0.0986694665 - - unnamed protein product [Vitis vinifera]
7 Hb_003050_150 0.1006505794 - - endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Ricinus communis]
8 Hb_000363_180 0.1035464601 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
9 Hb_000196_010 0.106304705 - - Patellin-5, putative [Ricinus communis]
10 Hb_002685_030 0.1070377123 - - PREDICTED: protein SMG7L [Jatropha curcas]
11 Hb_001522_040 0.1093675377 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_052117_010 0.1107210078 - - kinase, putative [Ricinus communis]
13 Hb_009745_010 0.1133161977 - - cellulose synthase-like protein [Populus tomentosa]
14 Hb_005288_050 0.1182833109 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
15 Hb_007031_040 0.1185952114 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
16 Hb_001205_180 0.1188768458 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
17 Hb_001133_090 0.1191333946 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
18 Hb_014720_030 0.1228303295 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
19 Hb_006949_060 0.1230662392 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
20 Hb_005724_050 0.1238281205 - - -

Gene co-expression network

sample Hb_000732_230 Hb_000732_230 Hb_000950_040 Hb_000950_040 Hb_000732_230--Hb_000950_040 Hb_115513_040 Hb_115513_040 Hb_000732_230--Hb_115513_040 Hb_001408_020 Hb_001408_020 Hb_000732_230--Hb_001408_020 Hb_001951_240 Hb_001951_240 Hb_000732_230--Hb_001951_240 Hb_000227_320 Hb_000227_320 Hb_000732_230--Hb_000227_320 Hb_003050_150 Hb_003050_150 Hb_000732_230--Hb_003050_150 Hb_052117_010 Hb_052117_010 Hb_000950_040--Hb_052117_010 Hb_000950_040--Hb_000227_320 Hb_000196_010 Hb_000196_010 Hb_000950_040--Hb_000196_010 Hb_006949_060 Hb_006949_060 Hb_000950_040--Hb_006949_060 Hb_000950_040--Hb_115513_040 Hb_083078_010 Hb_083078_010 Hb_115513_040--Hb_083078_010 Hb_115513_040--Hb_000227_320 Hb_115513_040--Hb_003050_150 Hb_001205_180 Hb_001205_180 Hb_115513_040--Hb_001205_180 Hb_009078_020 Hb_009078_020 Hb_001408_020--Hb_009078_020 Hb_002809_160 Hb_002809_160 Hb_001408_020--Hb_002809_160 Hb_007290_070 Hb_007290_070 Hb_001408_020--Hb_007290_070 Hb_001408_020--Hb_000227_320 Hb_187005_010 Hb_187005_010 Hb_001408_020--Hb_187005_010 Hb_172421_010 Hb_172421_010 Hb_001951_240--Hb_172421_010 Hb_001053_200 Hb_001053_200 Hb_001951_240--Hb_001053_200 Hb_000649_300 Hb_000649_300 Hb_001951_240--Hb_000649_300 Hb_002804_010 Hb_002804_010 Hb_001951_240--Hb_002804_010 Hb_002073_020 Hb_002073_020 Hb_001951_240--Hb_002073_020 Hb_003964_110 Hb_003964_110 Hb_000227_320--Hb_003964_110 Hb_000665_260 Hb_000665_260 Hb_000227_320--Hb_000665_260 Hb_000072_020 Hb_000072_020 Hb_000227_320--Hb_000072_020 Hb_033363_010 Hb_033363_010 Hb_000227_320--Hb_033363_010 Hb_000227_320--Hb_006949_060 Hb_003050_150--Hb_001205_180 Hb_004800_130 Hb_004800_130 Hb_003050_150--Hb_004800_130 Hb_002025_270 Hb_002025_270 Hb_003050_150--Hb_002025_270 Hb_002553_010 Hb_002553_010 Hb_003050_150--Hb_002553_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.62711 42.3399 28.4427 31.3334 9.91269 7.99656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.36181 1.581 1.41306 21.6205 20.1535

CAGE analysis