Hb_000649_300

Information

Type transcription factor
Description TF Family: Tify
Location Contig649: 312768-316464
Sequence    

Annotation

kegg
ID rcu:RCOM_1143570
description hypothetical protein
nr
ID AIY25010.1
description JAZ9 [Hevea brasiliensis]
swissprot
ID Q9LVI4
description Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1
trembl
ID A0A0B4RUT5
description JAZ9 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52500: 312755-316558 , PASA_asmbl_52501: 312755-316558 , PASA_asmbl_52502: 312755-316139 , PASA_asmbl_52503: 312755-316139 , PASA_asmbl_52504: 314504-314720
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_300 0.0 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
2 Hb_005496_160 0.0879816987 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
3 Hb_002874_170 0.0894633917 - - PREDICTED: L-arabinokinase-like isoform X3 [Jatropha curcas]
4 Hb_001951_240 0.1041347415 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
5 Hb_001053_200 0.1050700068 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
6 Hb_002910_010 0.10926582 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
7 Hb_002073_020 0.1137419732 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
8 Hb_002804_010 0.1236809689 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
9 Hb_002154_020 0.1270884706 - - protein with unknown function [Ricinus communis]
10 Hb_002534_050 0.1275944453 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
11 Hb_003216_050 0.1285690413 - - PREDICTED: OBERON-like protein [Jatropha curcas]
12 Hb_000008_430 0.1339705553 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
13 Hb_000753_140 0.136997718 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
14 Hb_004712_160 0.1378526668 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
15 Hb_001662_170 0.1383213625 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
16 Hb_032202_050 0.1383728033 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
17 Hb_172421_010 0.1398441128 - - cysteine protease [Hevea brasiliensis]
18 Hb_000613_220 0.1414141809 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
19 Hb_008103_100 0.1418007911 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
20 Hb_172676_010 0.1421112089 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]

Gene co-expression network

sample Hb_000649_300 Hb_000649_300 Hb_005496_160 Hb_005496_160 Hb_000649_300--Hb_005496_160 Hb_002874_170 Hb_002874_170 Hb_000649_300--Hb_002874_170 Hb_001951_240 Hb_001951_240 Hb_000649_300--Hb_001951_240 Hb_001053_200 Hb_001053_200 Hb_000649_300--Hb_001053_200 Hb_002910_010 Hb_002910_010 Hb_000649_300--Hb_002910_010 Hb_002073_020 Hb_002073_020 Hb_000649_300--Hb_002073_020 Hb_002154_020 Hb_002154_020 Hb_005496_160--Hb_002154_020 Hb_007849_050 Hb_007849_050 Hb_005496_160--Hb_007849_050 Hb_005496_160--Hb_001053_200 Hb_007007_080 Hb_007007_080 Hb_005496_160--Hb_007007_080 Hb_005496_160--Hb_001951_240 Hb_172676_010 Hb_172676_010 Hb_002874_170--Hb_172676_010 Hb_002874_170--Hb_001951_240 Hb_002874_170--Hb_002073_020 Hb_019863_060 Hb_019863_060 Hb_002874_170--Hb_019863_060 Hb_002874_170--Hb_005496_160 Hb_000732_230 Hb_000732_230 Hb_001951_240--Hb_000732_230 Hb_172421_010 Hb_172421_010 Hb_001951_240--Hb_172421_010 Hb_001951_240--Hb_001053_200 Hb_002804_010 Hb_002804_010 Hb_001951_240--Hb_002804_010 Hb_001951_240--Hb_002073_020 Hb_008103_100 Hb_008103_100 Hb_001053_200--Hb_008103_100 Hb_001662_170 Hb_001662_170 Hb_001053_200--Hb_001662_170 Hb_004032_310 Hb_004032_310 Hb_001053_200--Hb_004032_310 Hb_002910_010--Hb_001053_200 Hb_002910_010--Hb_008103_100 Hb_000027_130 Hb_000027_130 Hb_002910_010--Hb_000027_130 Hb_000771_070 Hb_000771_070 Hb_002910_010--Hb_000771_070 Hb_002910_010--Hb_002073_020 Hb_005539_100 Hb_005539_100 Hb_002073_020--Hb_005539_100 Hb_002073_020--Hb_172676_010 Hb_002073_020--Hb_001053_200 Hb_002073_020--Hb_005496_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.1675 582.256 341.118 152.033 48.5841 89.5345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.8941 18.485 20.5489 163.553 161.603

CAGE analysis