Hb_000771_070

Information

Type -
Description -
Location Contig771: 38026-42089
Sequence    

Annotation

kegg
ID tcc:TCM_015365
description Pyruvate kinase family protein isoform 1
nr
ID XP_012090091.1
description PREDICTED: plastidial pyruvate kinase 4, chloroplastic [Jatropha curcas]
swissprot
ID Q9M3B6
description Plastidial pyruvate kinase 4, chloroplastic OS=Arabidopsis thaliana GN=PKP4 PE=2 SV=1
trembl
ID A0A067JE64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25987 PE=4 SV=1
Gene Ontology
ID GO:0000287
description plastidial pyruvate kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57645: 39172-39357 , PASA_asmbl_57647: 40203-40595 , PASA_asmbl_57648: 40648-41455 , PASA_asmbl_57649: 41477-41989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000771_070 0.0 - - PREDICTED: plastidial pyruvate kinase 4, chloroplastic [Jatropha curcas]
2 Hb_000027_130 0.0717595158 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
3 Hb_000752_020 0.0971664572 - - PREDICTED: uncharacterized protein LOC105641803 isoform X1 [Jatropha curcas]
4 Hb_005814_010 0.1072310561 - - ATP binding protein, putative [Ricinus communis]
5 Hb_003529_230 0.1248565021 transcription factor TF Family: ERF -
6 Hb_000402_030 0.1269357941 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
7 Hb_025236_020 0.1285725211 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
8 Hb_000473_080 0.1298100252 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
9 Hb_012098_180 0.1335887535 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
10 Hb_002910_010 0.1355724208 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
11 Hb_000522_130 0.1358875793 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
12 Hb_001898_010 0.1362011849 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
13 Hb_005375_070 0.1409083345 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
14 Hb_009476_110 0.1433160816 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
15 Hb_003914_050 0.1457948934 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
16 Hb_000359_080 0.1467280961 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
17 Hb_001538_050 0.1488277783 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
18 Hb_002343_020 0.150489805 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
19 Hb_007416_170 0.151400309 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
20 Hb_052434_010 0.1520097167 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 [Sesamum indicum]

Gene co-expression network

sample Hb_000771_070 Hb_000771_070 Hb_000027_130 Hb_000027_130 Hb_000771_070--Hb_000027_130 Hb_000752_020 Hb_000752_020 Hb_000771_070--Hb_000752_020 Hb_005814_010 Hb_005814_010 Hb_000771_070--Hb_005814_010 Hb_003529_230 Hb_003529_230 Hb_000771_070--Hb_003529_230 Hb_000402_030 Hb_000402_030 Hb_000771_070--Hb_000402_030 Hb_025236_020 Hb_025236_020 Hb_000771_070--Hb_025236_020 Hb_000027_130--Hb_000752_020 Hb_000027_130--Hb_005814_010 Hb_000027_130--Hb_025236_020 Hb_000027_130--Hb_000402_030 Hb_002910_010 Hb_002910_010 Hb_000027_130--Hb_002910_010 Hb_000473_080 Hb_000473_080 Hb_000752_020--Hb_000473_080 Hb_000752_020--Hb_003529_230 Hb_000252_080 Hb_000252_080 Hb_000752_020--Hb_000252_080 Hb_000752_020--Hb_005814_010 Hb_000495_050 Hb_000495_050 Hb_005814_010--Hb_000495_050 Hb_000031_160 Hb_000031_160 Hb_005814_010--Hb_000031_160 Hb_005814_010--Hb_000402_030 Hb_052434_010 Hb_052434_010 Hb_005814_010--Hb_052434_010 Hb_000552_090 Hb_000552_090 Hb_005814_010--Hb_000552_090 Hb_003529_230--Hb_052434_010 Hb_003529_230--Hb_025236_020 Hb_003529_230--Hb_000402_030 Hb_003529_230--Hb_005814_010 Hb_002343_020 Hb_002343_020 Hb_000402_030--Hb_002343_020 Hb_005375_070 Hb_005375_070 Hb_000402_030--Hb_005375_070 Hb_001898_010 Hb_001898_010 Hb_000402_030--Hb_001898_010 Hb_149484_010 Hb_149484_010 Hb_000402_030--Hb_149484_010 Hb_007574_050 Hb_007574_050 Hb_000402_030--Hb_007574_050 Hb_025236_020--Hb_002343_020 Hb_000421_020 Hb_000421_020 Hb_025236_020--Hb_000421_020 Hb_025236_020--Hb_005814_010 Hb_025236_020--Hb_052434_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.707833 24.3317 11.7554 4.28962 0.127793 0.305644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.747265 0.364008 0.453666 5.35411 4.58225

CAGE analysis