Hb_002343_020

Information

Type -
Description -
Location Contig2343: 44996-51930
Sequence    

Annotation

kegg
ID rcu:RCOM_1681210
description DNA binding protein, putative
nr
ID XP_012087078.1
description PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
swissprot
ID Q8VYJ2
description AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana GN=AHL1 PE=1 SV=1
trembl
ID A0A067JNW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20738 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24576: 45209-51698
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002343_020 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
2 Hb_000402_030 0.0912925629 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
3 Hb_025236_020 0.1084178509 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
4 Hb_005649_010 0.1088076153 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
5 Hb_004032_090 0.1125990741 - - PREDICTED: protein AIG1 [Jatropha curcas]
6 Hb_001123_170 0.1142018649 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005375_070 0.1152201857 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
8 Hb_003964_010 0.1210162442 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]
9 Hb_001538_050 0.1213339851 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
10 Hb_001377_130 0.1213595927 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
11 Hb_149484_010 0.1223052947 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]
12 Hb_023386_050 0.1261079242 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006052_060 0.1262688959 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
14 Hb_005814_010 0.1280981274 - - ATP binding protein, putative [Ricinus communis]
15 Hb_002324_050 0.129525599 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
16 Hb_000092_080 0.1331208719 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_038742 [Vitis vinifera]
17 Hb_003656_170 0.1342245276 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
18 Hb_000382_030 0.1348817351 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
19 Hb_003430_070 0.1352194185 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
20 Hb_005539_100 0.1355996619 - - nucleoside transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_002343_020 Hb_002343_020 Hb_000402_030 Hb_000402_030 Hb_002343_020--Hb_000402_030 Hb_025236_020 Hb_025236_020 Hb_002343_020--Hb_025236_020 Hb_005649_010 Hb_005649_010 Hb_002343_020--Hb_005649_010 Hb_004032_090 Hb_004032_090 Hb_002343_020--Hb_004032_090 Hb_001123_170 Hb_001123_170 Hb_002343_020--Hb_001123_170 Hb_005375_070 Hb_005375_070 Hb_002343_020--Hb_005375_070 Hb_000402_030--Hb_005375_070 Hb_001898_010 Hb_001898_010 Hb_000402_030--Hb_001898_010 Hb_005814_010 Hb_005814_010 Hb_000402_030--Hb_005814_010 Hb_149484_010 Hb_149484_010 Hb_000402_030--Hb_149484_010 Hb_007574_050 Hb_007574_050 Hb_000402_030--Hb_007574_050 Hb_000421_020 Hb_000421_020 Hb_025236_020--Hb_000421_020 Hb_025236_020--Hb_005814_010 Hb_052434_010 Hb_052434_010 Hb_025236_020--Hb_052434_010 Hb_003529_230 Hb_003529_230 Hb_025236_020--Hb_003529_230 Hb_000771_070 Hb_000771_070 Hb_025236_020--Hb_000771_070 Hb_003964_010 Hb_003964_010 Hb_005649_010--Hb_003964_010 Hb_064985_010 Hb_064985_010 Hb_005649_010--Hb_064985_010 Hb_001377_130 Hb_001377_130 Hb_005649_010--Hb_001377_130 Hb_013938_010 Hb_013938_010 Hb_005649_010--Hb_013938_010 Hb_001318_110 Hb_001318_110 Hb_005649_010--Hb_001318_110 Hb_000008_430 Hb_000008_430 Hb_004032_090--Hb_000008_430 Hb_001123_190 Hb_001123_190 Hb_004032_090--Hb_001123_190 Hb_000009_150 Hb_000009_150 Hb_004032_090--Hb_000009_150 Hb_048476_040 Hb_048476_040 Hb_004032_090--Hb_048476_040 Hb_006052_060 Hb_006052_060 Hb_004032_090--Hb_006052_060 Hb_003656_170 Hb_003656_170 Hb_001123_170--Hb_003656_170 Hb_001123_170--Hb_001377_130 Hb_004544_090 Hb_004544_090 Hb_001123_170--Hb_004544_090 Hb_000382_030 Hb_000382_030 Hb_001123_170--Hb_000382_030 Hb_000477_110 Hb_000477_110 Hb_001123_170--Hb_000477_110 Hb_002078_250 Hb_002078_250 Hb_001123_170--Hb_002078_250 Hb_005375_070--Hb_001898_010 Hb_017857_010 Hb_017857_010 Hb_005375_070--Hb_017857_010 Hb_005000_050 Hb_005000_050 Hb_005375_070--Hb_005000_050 Hb_005375_070--Hb_149484_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04154 21.1893 12.4407 8.61254 0.509881 0.647816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.278135 0.6346 0.330109 10.3982 5.00993

CAGE analysis