Hb_013938_010

Information

Type -
Description -
Location Contig13938: 826-5120
Sequence    

Annotation

kegg
ID cit:102624560
description protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like
nr
ID XP_006491536.1
description PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067DDS7
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g037314mg PE=4 SV=1
Gene Ontology
ID GO:0043531
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10724: 2291-2800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013938_010 0.0 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
2 Hb_005649_010 0.1261621478 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
3 Hb_184008_010 0.129386055 - - putative LRR receptor-like serine/threonine-protein kinase [Morus notabilis]
4 Hb_003964_010 0.1328283757 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]
5 Hb_001318_110 0.1391318779 - - PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]
6 Hb_002343_020 0.1465851094 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
7 Hb_043987_010 0.1473196004 - - glutathione s-transferase, putative [Ricinus communis]
8 Hb_002641_050 0.1474562887 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 48 [Jatropha curcas]
9 Hb_000382_030 0.1506308635 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
10 Hb_002030_180 0.1543556891 - - ring finger protein, putative [Ricinus communis]
11 Hb_064985_010 0.1544428058 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
12 Hb_005628_050 0.1560654406 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
13 Hb_001377_130 0.1596545573 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
14 Hb_000739_160 0.1623282138 - - DNA binding protein, putative [Ricinus communis]
15 Hb_006634_090 0.1630863239 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
16 Hb_006934_020 0.1638131205 - - hypothetical protein POPTR_0004s09051g [Populus trichocarpa]
17 Hb_005542_030 0.1662069325 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 isoform X2 [Jatropha curcas]
18 Hb_001832_240 0.1662581679 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
19 Hb_002871_050 0.1676953343 transcription factor TF Family: ARF auxin response factor 1 family protein [Populus trichocarpa]
20 Hb_002450_180 0.1680087284 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_013938_010 Hb_013938_010 Hb_005649_010 Hb_005649_010 Hb_013938_010--Hb_005649_010 Hb_184008_010 Hb_184008_010 Hb_013938_010--Hb_184008_010 Hb_003964_010 Hb_003964_010 Hb_013938_010--Hb_003964_010 Hb_001318_110 Hb_001318_110 Hb_013938_010--Hb_001318_110 Hb_002343_020 Hb_002343_020 Hb_013938_010--Hb_002343_020 Hb_043987_010 Hb_043987_010 Hb_013938_010--Hb_043987_010 Hb_005649_010--Hb_002343_020 Hb_005649_010--Hb_003964_010 Hb_064985_010 Hb_064985_010 Hb_005649_010--Hb_064985_010 Hb_001377_130 Hb_001377_130 Hb_005649_010--Hb_001377_130 Hb_005649_010--Hb_001318_110 Hb_002641_050 Hb_002641_050 Hb_184008_010--Hb_002641_050 Hb_000001_010 Hb_000001_010 Hb_184008_010--Hb_000001_010 Hb_052434_010 Hb_052434_010 Hb_184008_010--Hb_052434_010 Hb_184008_010--Hb_001318_110 Hb_000008_430 Hb_000008_430 Hb_184008_010--Hb_000008_430 Hb_002078_250 Hb_002078_250 Hb_003964_010--Hb_002078_250 Hb_003656_170 Hb_003656_170 Hb_003964_010--Hb_003656_170 Hb_002324_050 Hb_002324_050 Hb_003964_010--Hb_002324_050 Hb_003964_010--Hb_064985_010 Hb_003964_010--Hb_002343_020 Hb_001318_110--Hb_002641_050 Hb_001832_240 Hb_001832_240 Hb_001318_110--Hb_001832_240 Hb_005628_050 Hb_005628_050 Hb_001318_110--Hb_005628_050 Hb_000031_160 Hb_000031_160 Hb_001318_110--Hb_000031_160 Hb_000402_030 Hb_000402_030 Hb_002343_020--Hb_000402_030 Hb_025236_020 Hb_025236_020 Hb_002343_020--Hb_025236_020 Hb_004032_090 Hb_004032_090 Hb_002343_020--Hb_004032_090 Hb_001123_170 Hb_001123_170 Hb_002343_020--Hb_001123_170 Hb_005375_070 Hb_005375_070 Hb_002343_020--Hb_005375_070 Hb_002030_180 Hb_002030_180 Hb_043987_010--Hb_002030_180 Hb_002477_100 Hb_002477_100 Hb_043987_010--Hb_002477_100 Hb_043987_010--Hb_001377_130 Hb_005542_030 Hb_005542_030 Hb_043987_010--Hb_005542_030 Hb_043987_010--Hb_005628_050 Hb_043987_010--Hb_005649_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.426316 3.12852 3.59592 2.35978 0.0202227 0.0293195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0474529 0.0373366 0.141428 2.54861 0.945583

CAGE analysis