Hb_002477_100

Information

Type -
Description -
Location Contig2477: 59312-64651
Sequence    

Annotation

kegg
ID rcu:RCOM_0653770
description Ran GTPase binding protein, putative
nr
ID XP_012068903.1
description PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
swissprot
ID Q8GYL9
description Protein Brevis radix-like 2 OS=Arabidopsis thaliana GN=BRXL2 PE=2 SV=1
trembl
ID A0A067L0K6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24717 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25780: 63241-64511
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_100 0.0 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
2 Hb_043987_010 0.1185038782 - - glutathione s-transferase, putative [Ricinus communis]
3 Hb_002030_180 0.1386033304 - - ring finger protein, putative [Ricinus communis]
4 Hb_023278_030 0.1601784708 - - zinc finger protein, putative [Ricinus communis]
5 Hb_002597_020 0.1638579864 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_000020_070 0.1749343245 - - PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]
7 Hb_001318_110 0.1764850738 - - PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]
8 Hb_000320_020 0.1787329195 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
9 Hb_068576_010 0.1829590314 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
10 Hb_013938_010 0.1843251348 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
11 Hb_001040_060 0.1897091112 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
12 Hb_004920_110 0.1926162311 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000094_120 0.1934464039 - - PREDICTED: uncharacterized protein At1g01500 [Jatropha curcas]
14 Hb_000914_130 0.1938972747 - - copper-transporting atpase p-type, putative [Ricinus communis]
15 Hb_021576_120 0.1944365485 - - DNA-directed RNA polymerase subunit, putative [Ricinus communis]
16 Hb_005649_010 0.1953002126 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
17 Hb_000340_350 0.1955661769 - - PREDICTED: sugar transporter ERD6-like 7 isoform X1 [Jatropha curcas]
18 Hb_000002_350 0.196602471 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
19 Hb_005628_050 0.1994269511 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
20 Hb_000009_150 0.1995599035 - - carbohydrate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_002477_100 Hb_002477_100 Hb_043987_010 Hb_043987_010 Hb_002477_100--Hb_043987_010 Hb_002030_180 Hb_002030_180 Hb_002477_100--Hb_002030_180 Hb_023278_030 Hb_023278_030 Hb_002477_100--Hb_023278_030 Hb_002597_020 Hb_002597_020 Hb_002477_100--Hb_002597_020 Hb_000020_070 Hb_000020_070 Hb_002477_100--Hb_000020_070 Hb_001318_110 Hb_001318_110 Hb_002477_100--Hb_001318_110 Hb_043987_010--Hb_002030_180 Hb_001377_130 Hb_001377_130 Hb_043987_010--Hb_001377_130 Hb_005542_030 Hb_005542_030 Hb_043987_010--Hb_005542_030 Hb_005628_050 Hb_005628_050 Hb_043987_010--Hb_005628_050 Hb_005649_010 Hb_005649_010 Hb_043987_010--Hb_005649_010 Hb_005814_010 Hb_005814_010 Hb_002030_180--Hb_005814_010 Hb_000495_050 Hb_000495_050 Hb_002030_180--Hb_000495_050 Hb_000031_160 Hb_000031_160 Hb_002030_180--Hb_000031_160 Hb_000009_150 Hb_000009_150 Hb_002030_180--Hb_000009_150 Hb_000002_350 Hb_000002_350 Hb_023278_030--Hb_000002_350 Hb_127416_010 Hb_127416_010 Hb_023278_030--Hb_127416_010 Hb_001022_050 Hb_001022_050 Hb_023278_030--Hb_001022_050 Hb_005545_020 Hb_005545_020 Hb_023278_030--Hb_005545_020 Hb_000529_040 Hb_000529_040 Hb_023278_030--Hb_000529_040 Hb_068576_010 Hb_068576_010 Hb_002597_020--Hb_068576_010 Hb_002597_020--Hb_023278_030 Hb_021576_120 Hb_021576_120 Hb_002597_020--Hb_021576_120 Hb_000005_340 Hb_000005_340 Hb_002597_020--Hb_000005_340 Hb_000847_020 Hb_000847_020 Hb_002597_020--Hb_000847_020 Hb_001247_020 Hb_001247_020 Hb_000020_070--Hb_001247_020 Hb_001636_060 Hb_001636_060 Hb_000020_070--Hb_001636_060 Hb_007894_180 Hb_007894_180 Hb_000020_070--Hb_007894_180 Hb_001511_250 Hb_001511_250 Hb_000020_070--Hb_001511_250 Hb_005080_020 Hb_005080_020 Hb_000020_070--Hb_005080_020 Hb_119316_020 Hb_119316_020 Hb_000020_070--Hb_119316_020 Hb_001318_110--Hb_005649_010 Hb_002641_050 Hb_002641_050 Hb_001318_110--Hb_002641_050 Hb_013938_010 Hb_013938_010 Hb_001318_110--Hb_013938_010 Hb_001832_240 Hb_001832_240 Hb_001318_110--Hb_001832_240 Hb_001318_110--Hb_005628_050 Hb_001318_110--Hb_000031_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0539298 3.69295 5.37927 2.27294 0.012735 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0289411 0.432621 0.857681 3.17827 0.907484

CAGE analysis