Hb_001636_060

Information

Type -
Description -
Location Contig1636: 65269-67728
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06860g
description POPTRDRAFT_564026; hypothetical protein
nr
ID KHN04766.1
description Putative serine/threonine-protein kinase-like protein CCR3 [Glycine soja]
swissprot
ID Q9LY50
description Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1
trembl
ID A0A0B2RV97
description Putative serine/threonine-protein kinase-like protein CCR3 OS=Glycine soja GN=glysoja_041398 PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001636_060 0.0 - - Putative serine/threonine-protein kinase-like protein CCR3 [Glycine soja]
2 Hb_001511_250 0.0863680562 - - fatty acid desaturase [Manihot esculenta]
3 Hb_119316_020 0.1104537494 - - -
4 Hb_031108_010 0.1437855125 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
5 Hb_000020_070 0.1478809366 - - PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]
6 Hb_005080_020 0.1519064081 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
7 Hb_001898_130 0.1521065365 - - ATP binding protein, putative [Ricinus communis]
8 Hb_001242_180 0.1651071315 - - choline/ethanolamine kinase, putative [Ricinus communis]
9 Hb_001579_070 0.1687640898 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
10 Hb_001226_170 0.169256549 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
11 Hb_001247_020 0.1743142954 - - galactinol synthase family protein [Populus trichocarpa]
12 Hb_007218_060 0.1746624854 - - PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
13 Hb_000003_240 0.1761075391 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000913_080 0.178413198 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 11 [Jatropha curcas]
15 Hb_018790_050 0.1795224298 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
16 Hb_000272_110 0.1834938921 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
17 Hb_000086_620 0.1835296825 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
18 Hb_048476_040 0.184016677 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
19 Hb_002030_180 0.1851162218 - - ring finger protein, putative [Ricinus communis]
20 Hb_002876_070 0.1873859001 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]

Gene co-expression network

sample Hb_001636_060 Hb_001636_060 Hb_001511_250 Hb_001511_250 Hb_001636_060--Hb_001511_250 Hb_119316_020 Hb_119316_020 Hb_001636_060--Hb_119316_020 Hb_031108_010 Hb_031108_010 Hb_001636_060--Hb_031108_010 Hb_000020_070 Hb_000020_070 Hb_001636_060--Hb_000020_070 Hb_005080_020 Hb_005080_020 Hb_001636_060--Hb_005080_020 Hb_001898_130 Hb_001898_130 Hb_001636_060--Hb_001898_130 Hb_001511_250--Hb_119316_020 Hb_001511_250--Hb_005080_020 Hb_001511_250--Hb_031108_010 Hb_001511_250--Hb_000020_070 Hb_000086_620 Hb_000086_620 Hb_001511_250--Hb_000086_620 Hb_119316_020--Hb_000086_620 Hb_001579_070 Hb_001579_070 Hb_119316_020--Hb_001579_070 Hb_119316_020--Hb_031108_010 Hb_001242_180 Hb_001242_180 Hb_119316_020--Hb_001242_180 Hb_009476_110 Hb_009476_110 Hb_031108_010--Hb_009476_110 Hb_000776_050 Hb_000776_050 Hb_031108_010--Hb_000776_050 Hb_124677_020 Hb_124677_020 Hb_031108_010--Hb_124677_020 Hb_031108_010--Hb_001579_070 Hb_155946_030 Hb_155946_030 Hb_031108_010--Hb_155946_030 Hb_031108_010--Hb_000086_620 Hb_001247_020 Hb_001247_020 Hb_000020_070--Hb_001247_020 Hb_007894_180 Hb_007894_180 Hb_000020_070--Hb_007894_180 Hb_000020_070--Hb_005080_020 Hb_000020_070--Hb_119316_020 Hb_048476_040 Hb_048476_040 Hb_005080_020--Hb_048476_040 Hb_001369_020 Hb_001369_020 Hb_005080_020--Hb_001369_020 Hb_132840_020 Hb_132840_020 Hb_005080_020--Hb_132840_020 Hb_001623_410 Hb_001623_410 Hb_005080_020--Hb_001623_410 Hb_000009_150 Hb_000009_150 Hb_005080_020--Hb_000009_150 Hb_000329_790 Hb_000329_790 Hb_005080_020--Hb_000329_790 Hb_018790_050 Hb_018790_050 Hb_001898_130--Hb_018790_050 Hb_000069_330 Hb_000069_330 Hb_001898_130--Hb_000069_330 Hb_003581_280 Hb_003581_280 Hb_001898_130--Hb_003581_280 Hb_000009_200 Hb_000009_200 Hb_001898_130--Hb_000009_200 Hb_001474_050 Hb_001474_050 Hb_001898_130--Hb_001474_050 Hb_001898_130--Hb_048476_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0570051 6.68877 5.81978 2.98119 0.0285408 0.0265052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.345385 0.985141 1.61217 1.10105 1.36562

CAGE analysis