Hb_001474_050

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig1474: 91371-94856
Sequence    

Annotation

kegg
ID rcu:RCOM_0022220
description GATA transcription factor, putative
nr
ID XP_002534043.1
description GATA transcription factor, putative [Ricinus communis]
swissprot
ID Q9SV30
description GATA transcription factor 8 OS=Arabidopsis thaliana GN=GATA8 PE=2 SV=1
trembl
ID B9T724
description GATA transcription factor, putative OS=Ricinus communis GN=RCOM_0022220 PE=4 SV=1
Gene Ontology
ID GO:0005634
description gata transcription factor 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12022: 91449-94840
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001474_050 0.0 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
2 Hb_001898_130 0.1140637094 - - ATP binding protein, putative [Ricinus communis]
3 Hb_005332_140 0.1150255392 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X2 [Jatropha curcas]
4 Hb_000735_140 0.1182701957 - - 3-glucanase family protein [Populus trichocarpa]
5 Hb_003849_190 0.1308650268 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
6 Hb_001102_200 0.1319593634 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
7 Hb_143766_030 0.1350413203 - - protein with unknown function [Ricinus communis]
8 Hb_005162_140 0.1352607229 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
9 Hb_009189_050 0.1430489316 - - PREDICTED: uncharacterized protein LOC105648080 [Jatropha curcas]
10 Hb_009862_020 0.1475821981 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
11 Hb_000009_200 0.1485753818 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
12 Hb_012762_040 0.1496504306 - - big map kinase/bmk, putative [Ricinus communis]
13 Hb_002281_010 0.1504083517 - - hypothetical protein POPTR_0001s47550g [Populus trichocarpa]
14 Hb_003177_070 0.1505026295 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
15 Hb_014720_050 0.1506064625 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
16 Hb_023344_110 0.1510853753 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
17 Hb_003581_280 0.1517479147 - - KINASE 2B family protein [Populus trichocarpa]
18 Hb_000371_120 0.1521624352 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
19 Hb_000753_120 0.154042405 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
20 Hb_048476_040 0.1541031454 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]

Gene co-expression network

sample Hb_001474_050 Hb_001474_050 Hb_001898_130 Hb_001898_130 Hb_001474_050--Hb_001898_130 Hb_005332_140 Hb_005332_140 Hb_001474_050--Hb_005332_140 Hb_000735_140 Hb_000735_140 Hb_001474_050--Hb_000735_140 Hb_003849_190 Hb_003849_190 Hb_001474_050--Hb_003849_190 Hb_001102_200 Hb_001102_200 Hb_001474_050--Hb_001102_200 Hb_143766_030 Hb_143766_030 Hb_001474_050--Hb_143766_030 Hb_018790_050 Hb_018790_050 Hb_001898_130--Hb_018790_050 Hb_000069_330 Hb_000069_330 Hb_001898_130--Hb_000069_330 Hb_003581_280 Hb_003581_280 Hb_001898_130--Hb_003581_280 Hb_000009_200 Hb_000009_200 Hb_001898_130--Hb_000009_200 Hb_048476_040 Hb_048476_040 Hb_001898_130--Hb_048476_040 Hb_005332_140--Hb_003581_280 Hb_003177_070 Hb_003177_070 Hb_005332_140--Hb_003177_070 Hb_001102_090 Hb_001102_090 Hb_005332_140--Hb_001102_090 Hb_002281_010 Hb_002281_010 Hb_005332_140--Hb_002281_010 Hb_002900_120 Hb_002900_120 Hb_005332_140--Hb_002900_120 Hb_002849_070 Hb_002849_070 Hb_000735_140--Hb_002849_070 Hb_000735_140--Hb_003849_190 Hb_000735_140--Hb_143766_030 Hb_000111_370 Hb_000111_370 Hb_000735_140--Hb_000111_370 Hb_000735_080 Hb_000735_080 Hb_000735_140--Hb_000735_080 Hb_000056_080 Hb_000056_080 Hb_000735_140--Hb_000056_080 Hb_008248_020 Hb_008248_020 Hb_003849_190--Hb_008248_020 Hb_023344_110 Hb_023344_110 Hb_003849_190--Hb_023344_110 Hb_002875_070 Hb_002875_070 Hb_003849_190--Hb_002875_070 Hb_002450_030 Hb_002450_030 Hb_003849_190--Hb_002450_030 Hb_003849_190--Hb_000056_080 Hb_000110_260 Hb_000110_260 Hb_001102_200--Hb_000110_260 Hb_000320_270 Hb_000320_270 Hb_001102_200--Hb_000320_270 Hb_000329_790 Hb_000329_790 Hb_001102_200--Hb_000329_790 Hb_005064_070 Hb_005064_070 Hb_001102_200--Hb_005064_070 Hb_005725_280 Hb_005725_280 Hb_001102_200--Hb_005725_280 Hb_089305_010 Hb_089305_010 Hb_001102_200--Hb_089305_010 Hb_002248_120 Hb_002248_120 Hb_143766_030--Hb_002248_120 Hb_003605_220 Hb_003605_220 Hb_143766_030--Hb_003605_220 Hb_000200_170 Hb_000200_170 Hb_143766_030--Hb_000200_170 Hb_143766_030--Hb_023344_110 Hb_000069_780 Hb_000069_780 Hb_143766_030--Hb_000069_780
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.24304 71.7808 52.4572 57.5576 7.08713 2.01597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.62521 7.86658 21.7475 11.4771 38.6688

CAGE analysis