Hb_005064_070

Information

Type -
Description -
Location Contig5064: 102211-105532
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23990g
description POPTRDRAFT_770638; hypothetical protein
nr
ID XP_012090060.1
description PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L998
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01536 PE=4 SV=1
Gene Ontology
ID GO:0042744
description phosphatase 2c 66 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46156: 102420-105532
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005064_070 0.0 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
2 Hb_048476_040 0.0795776945 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
3 Hb_003670_030 0.0884618324 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
4 Hb_000329_790 0.0931877053 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
5 Hb_054865_050 0.0940789923 - - calcium-dependent protein kinase, putative [Ricinus communis]
6 Hb_009449_100 0.0957216958 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
7 Hb_000375_060 0.1004427692 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
8 Hb_132840_020 0.1180903954 - - PREDICTED: protein LHY [Jatropha curcas]
9 Hb_000009_150 0.1196148206 - - carbohydrate transporter, putative [Ricinus communis]
10 Hb_056196_060 0.1203851667 - - hexokinase [Manihot esculenta]
11 Hb_086639_050 0.1231981752 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_000000_480 0.1235771306 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
13 Hb_001102_200 0.1238588175 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
14 Hb_001514_240 0.124704182 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
15 Hb_002249_170 0.1253420691 - - copine, putative [Ricinus communis]
16 Hb_000735_140 0.1266398215 - - 3-glucanase family protein [Populus trichocarpa]
17 Hb_001318_150 0.1268364722 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
18 Hb_001294_050 0.1283584518 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
19 Hb_012762_040 0.129788649 - - big map kinase/bmk, putative [Ricinus communis]
20 Hb_000098_180 0.1303377706 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005064_070 Hb_005064_070 Hb_048476_040 Hb_048476_040 Hb_005064_070--Hb_048476_040 Hb_003670_030 Hb_003670_030 Hb_005064_070--Hb_003670_030 Hb_000329_790 Hb_000329_790 Hb_005064_070--Hb_000329_790 Hb_054865_050 Hb_054865_050 Hb_005064_070--Hb_054865_050 Hb_009449_100 Hb_009449_100 Hb_005064_070--Hb_009449_100 Hb_000375_060 Hb_000375_060 Hb_005064_070--Hb_000375_060 Hb_132840_020 Hb_132840_020 Hb_048476_040--Hb_132840_020 Hb_048476_040--Hb_000329_790 Hb_005080_020 Hb_005080_020 Hb_048476_040--Hb_005080_020 Hb_048476_040--Hb_054865_050 Hb_001294_050 Hb_001294_050 Hb_048476_040--Hb_001294_050 Hb_056196_060 Hb_056196_060 Hb_003670_030--Hb_056196_060 Hb_000056_080 Hb_000056_080 Hb_003670_030--Hb_000056_080 Hb_002325_060 Hb_002325_060 Hb_003670_030--Hb_002325_060 Hb_003670_030--Hb_000375_060 Hb_000000_480 Hb_000000_480 Hb_003670_030--Hb_000000_480 Hb_000329_790--Hb_132840_020 Hb_000329_790--Hb_009449_100 Hb_001179_010 Hb_001179_010 Hb_000329_790--Hb_001179_010 Hb_000366_050 Hb_000366_050 Hb_000329_790--Hb_000366_050 Hb_054865_050--Hb_009449_100 Hb_002249_170 Hb_002249_170 Hb_054865_050--Hb_002249_170 Hb_054865_050--Hb_000375_060 Hb_001514_240 Hb_001514_240 Hb_054865_050--Hb_001514_240 Hb_000098_180 Hb_000098_180 Hb_054865_050--Hb_000098_180 Hb_009449_100--Hb_001514_240 Hb_002259_220 Hb_002259_220 Hb_009449_100--Hb_002259_220 Hb_026698_020 Hb_026698_020 Hb_009449_100--Hb_026698_020 Hb_000979_140 Hb_000979_140 Hb_000375_060--Hb_000979_140 Hb_001729_020 Hb_001729_020 Hb_000375_060--Hb_001729_020 Hb_000375_060--Hb_000098_180 Hb_000853_330 Hb_000853_330 Hb_000375_060--Hb_000853_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.53526 78.3897 88.842 78.6512 4.71593 6.67202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.91897 11.2209 10.9372 35.4278 39.0234

CAGE analysis