Hb_002325_060

Information

Type -
Description -
Location Contig2325: 62895-66784
Sequence    

Annotation

kegg
ID gmx:100801039
description ADP-ribosylation factor-like protein 8B-like
nr
ID XP_003544985.1
description PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
swissprot
ID Q6NZW8
description ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1
trembl
ID I1MBV8
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation factor-like protein 8b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24442: 63011-66882 , PASA_asmbl_24444: 64645-64992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002325_060 0.0 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
2 Hb_000622_330 0.1149058118 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
3 Hb_000922_320 0.1152292714 - - hypothetical protein B456_001G071400 [Gossypium raimondii]
4 Hb_003670_030 0.1158363652 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
5 Hb_004218_120 0.1164148526 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
6 Hb_005054_020 0.1174997059 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
7 Hb_002281_010 0.1178216961 - - hypothetical protein POPTR_0001s47550g [Populus trichocarpa]
8 Hb_002235_060 0.1181355525 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
9 Hb_000000_480 0.1204030184 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
10 Hb_000928_120 0.1234487067 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
11 Hb_002374_270 0.1256788492 - - conserved hypothetical protein [Ricinus communis]
12 Hb_029253_010 0.1283242774 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
13 Hb_000028_430 0.1286404202 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
14 Hb_000375_060 0.1314363203 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
15 Hb_012762_040 0.1318164031 - - big map kinase/bmk, putative [Ricinus communis]
16 Hb_000197_180 0.133475133 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
17 Hb_000056_080 0.1343573408 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
18 Hb_000853_330 0.1364537981 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
19 Hb_002349_030 0.1382747524 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003849_190 0.1386886369 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]

Gene co-expression network

sample Hb_002325_060 Hb_002325_060 Hb_000622_330 Hb_000622_330 Hb_002325_060--Hb_000622_330 Hb_000922_320 Hb_000922_320 Hb_002325_060--Hb_000922_320 Hb_003670_030 Hb_003670_030 Hb_002325_060--Hb_003670_030 Hb_004218_120 Hb_004218_120 Hb_002325_060--Hb_004218_120 Hb_005054_020 Hb_005054_020 Hb_002325_060--Hb_005054_020 Hb_002281_010 Hb_002281_010 Hb_002325_060--Hb_002281_010 Hb_010050_020 Hb_010050_020 Hb_000622_330--Hb_010050_020 Hb_000928_120 Hb_000928_120 Hb_000622_330--Hb_000928_120 Hb_006120_060 Hb_006120_060 Hb_000622_330--Hb_006120_060 Hb_002217_080 Hb_002217_080 Hb_000622_330--Hb_002217_080 Hb_000000_480 Hb_000000_480 Hb_000622_330--Hb_000000_480 Hb_004522_030 Hb_004522_030 Hb_000622_330--Hb_004522_030 Hb_029253_010 Hb_029253_010 Hb_000922_320--Hb_029253_010 Hb_000922_320--Hb_000000_480 Hb_002235_060 Hb_002235_060 Hb_000922_320--Hb_002235_060 Hb_000757_130 Hb_000757_130 Hb_000922_320--Hb_000757_130 Hb_012762_040 Hb_012762_040 Hb_000922_320--Hb_012762_040 Hb_005064_070 Hb_005064_070 Hb_003670_030--Hb_005064_070 Hb_056196_060 Hb_056196_060 Hb_003670_030--Hb_056196_060 Hb_000056_080 Hb_000056_080 Hb_003670_030--Hb_000056_080 Hb_000375_060 Hb_000375_060 Hb_003670_030--Hb_000375_060 Hb_003670_030--Hb_000000_480 Hb_000203_270 Hb_000203_270 Hb_004218_120--Hb_000203_270 Hb_001135_030 Hb_001135_030 Hb_004218_120--Hb_001135_030 Hb_002849_070 Hb_002849_070 Hb_004218_120--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_004218_120--Hb_000200_170 Hb_002876_210 Hb_002876_210 Hb_004218_120--Hb_002876_210 Hb_000028_430 Hb_000028_430 Hb_005054_020--Hb_000028_430 Hb_005054_020--Hb_000928_120 Hb_003849_190 Hb_003849_190 Hb_005054_020--Hb_003849_190 Hb_000365_280 Hb_000365_280 Hb_005054_020--Hb_000365_280 Hb_005054_020--Hb_000056_080 Hb_000915_130 Hb_000915_130 Hb_002281_010--Hb_000915_130 Hb_002281_010--Hb_012762_040 Hb_005332_140 Hb_005332_140 Hb_002281_010--Hb_005332_140 Hb_002281_010--Hb_000000_480 Hb_011671_340 Hb_011671_340 Hb_002281_010--Hb_011671_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23744 12.0992 14.1493 20.6648 1.82078 1.6531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.13026 5.93456 1.6095 5.54441 8.13538

CAGE analysis